TTTTTTTNCNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCG
AGGATCCGCGGAATTCATTTGTATTCAGTTTCAAAAATATTAAAGTAACT
AATGTAAAAAACTAAAGTTATTTCTACTATATAGCATCTTGTCTTTCATA
ATTCTTATGTTAACACATCATTTTAATTACAATGTTAAATTATCTATGGC
ATATTTTTTCATTATACTTATCAGAGATTTATTAGATATATTTTATTCCA
ATGCACATTTATCTATTTCTATCCACTTGTTTCATGTTGCTTAGCTTCAG
CATTTTTCTTATTGTTTGTTCTCGTCTTTTTGCCTTTTTTTGGTTAATTT
TGTACCCTTTTAACTGAGAATGCTGGTCTTCAGACATTTTTGTTCTTAAG
AACTAATGTACATTTCTATCAGTATGATAATTTCCACATTTCATTTGTTC
AGACCATTCTTTCTCATCATGACTCTTGTGTATTTTCCTTTGATTATTAC
CATAATCTGACTTGTGTTGCTAGGCTTCAGACTCGTTCTGATTTCCTGGG
TCTTGTTTTGTTGTTGACTTTTTGCCACAGCATATTATGGTTAGAAATAT
TTTGCATAACTTTAGTCAAGTCAGTTTTGCTAATTTTCCCATTATGGACC
AACAAATGGTAGCCAACAATTCTGAACTTGAAAATAATGTGTATTCTGCA
AACATTTTGGCTGGTGTTCTGCATTGTTAAGTTGTTAA

CCTTTTTTTTTTCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCATGGAAAATCA
AATGGCGAGAACCATTTAAATGTTCGATATCCCTAGTCTTCAGGGAAATG
CAAATTGAAAATCAAAGCTCCTTTGAGAGTTCATCTTACATCTGTCAAAA
TTGCCAAGATCAATAAAACAAGTGACACTTCATGTTGGTGAAGATGAACA
CTTATCCATTGGTGGTGGGAGTGAAAACTTCTACAGACACTATGAAAATC
ACTGTGGCAGTTCCCCAGGAAGATGAGAATGCCTTACCTCAATATCCAGC
TATACCACTTGTGGGCATGTACCCAAAGAATGTTTCATTCTATCACAAAG
ACCACAATGAAATCATGTTCATTGCAGTTTTATTCATAATATCTAGAAAT
CACAAACAATGTAGATGTCCTTCAACACAAGACTCCTCTACACAATGGAG
TATTACTCAGTTGTTTTCAAAAAACTGAAATCATGAAATTCACAGGCAAA
TGGATGGAACTAGGGAAAGTTCTTGAGTTAGGTGTCCCATATGCAGAAAT
ACAAATATATTTACTTACATGTGGATATTAGTCATTAAATAAATGATAAC
TAGCCTATAATCTGTAGACTCAAAGAGGCTAGGTAGAGAAGTTAGTAGAT
TTAATCTTAAATAANGTTCTCATCTATTAGAGGTCCCCACATG

Query= MSMg01no503_n21.b1 MSMg01no503_n21.b1 CHROMAT_FILE:
MSMg01no503_n21.b1 PHD_FILE: MSMg01no503_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:16 2005
         (559 letters)



>mm_chr4_4360877_4361834
          Length = 958

 Score =  973 bits (503), Expect = 0.0
 Identities = 542/555 (97%), Gaps = 1/555 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttgtattcagtttcaaaaatattaaagtaactaatgtaaaaaactaaagtta 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttgtatggagtttcaaaaatattaaagtaactaatgtaaaaaactaaagtta 264

                                                                       
Query: 65  tttctactatatagcatcttgtctttcataattcttatgttaacacatcattttaattac 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttctactatatagtatcttgtctttcataattcttatgttaacacatcattttaattac 324

                                                                       
Query: 125 aatgttaaattatctatggcatattttttcattatacttatcagagatttattagatata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 aatgttaaattatctatggcatattttttcattatacttatcagagatttattaggtata 384

                                                                       
Query: 185 ttttattccaatgcacatttatctatttctatccacttgtttcatgttgcttagcttcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 ttttattccaatgcacatttatctatttctatccacttgtttcatgttgtttagcttcag 444

                                                                       
Query: 245 catttttcttattgtttgttctcgtctttttgcctttttttggttaattttgtacccttt 304
           ||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 445 catttttcttactgtttgttcttgtctttttgccttttttt-gttaattttgtacccttt 503

                                                                       
Query: 305 taactgagaatgctggtcttcagacatttttgttcttaagaactaatgtacatttctatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 504 taactgagaatgctggtcttcagacatttttgttcttaagaactaatgtccatttctatc 563

                                                                       
Query: 365 agtatgataatttccacatttcatttgttcagaccattctttctcatcatgactcttgtg 424
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtatgacaatttccacatttcatttgttcagaccattctttctcatcatgactcttgtg 623

                                                                       
Query: 425 tattttcctttgattattaccataatctgacttgtgttgctaggcttcagactcgttctg 484
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 624 tattttcctttgattattaccataacctgacttgtgttgctaggcttcagactcattctg 683

                                                                       
Query: 485 atttcctgggtcttgttttgttgttgactttttgccacagcatattatggttagaaatat 544
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 684 atttcctgggtcttgttttgttgttgactttttgccacagcatattacggttagaaatat 743

                          
Query: 545 tttgcataactttag 559
           |||||||||||||||
Sbjct: 744 tttgcataactttag 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 958
Length adjustment: 10
Effective length of query: 549
Effective length of database: 948
Effective search space:   520452
Effective search space used:   520452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)