BAC Information

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BAC

Clone NameMSMg01-503P12
Chromosome4 (Build37)
Map Location 98,587,798 - 98,587,979
singlet/doubletsinglet
Overlap genenone
Upstream geneNfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38, LOC100039541
Downstream geneUsp1, Dock7, Angptl3, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503P12.T7 (MSMg01no503_p12.b1)MSMg01-503P12.TJ (MSMg01no503_p12.g1)
ACCAG578959AG578960
length731685
length of high quality
(start - end)
184 (334 - 517)166 (60 - 225)
definitionCHROMAT_FILE: MSMg01no503_p12.b1 PHD_FILE: MSMg01no503_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:25 2005CHROMAT_FILE: MSMg01no503_p12.g1 PHD_FILE: MSMg01no503_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCTTTTCTCTCTATAAATTGTGGCCGGTAAACGGAATAGGTTCTTCAA
ACCAGGCGNNGGAANNNCAGCTTTCCCAACAAGAGAAGGGGCTCTCTTCC
CTGTCTAAGTTCCTTCTCATAATTCCCCCTTCTGTCCTGTTAAAGCTCTT
ATTAAATTCGCTGAGTAGCATTGAATAGTACATTGGAACTAGTAGGTAGC
AGTGCTTATACCATAACTTGTGGTGGGGGAAAAAAAAAGCTAGACCTCAG
AGCACATTCTAGAAGAACCACGAAGAGGATGATTCAGAGTCAAGGACTGA
ATGGTGACTTGAAATACAGTATCTTTTTTATTATGCTAAGCTGGTAGGAG
TCGCACCAGGTACAGTGGTGCTCACCTGGAATCCCTCACCAAGGAGGCTG
GGGCAGAAGAACTGCCAGAAATTCAGTGGGTTGGCATGCTTTCATATATT
GAGATATAGGTGTTGTGGTGTGTTCCTATTATGCAAGCACTTGAAAGGCT
TATTCAAGAGACTCGCGAGTCTCATCCCATCTTGATTACATAGAGAGACC
CTGTCTCAGGAGGAAGAGGAAGATTATTAGGACGTCAGTCTCCCCCGTTT
CTATGGGCCAAAGCTGTTTTTTGTGTATGCCCAACACCCTGTATCCCTTT
TTATAACGATACCTTCACCTCCCCACAATTTGTTCCTTTACTTACAATAT
CGCTGTGTTTCTTAGCCCTGCGCCCACATTT
TGGAGGACGACCGGCCTACAACACAGGGGNGAANNANAGAATGTTCCGCA
AAAACGCCTGTCCTATGCCCAGGACTCCCTCCTTAGGAGCCCCGAGTCTC
TGACGTTGACTTCACTTAGGACCCATCCAAGCAGTATCAGGAACAGCAAG
GCCAGACTCCCTGAAAGTCAGTGCCCTTGAGGACAGACTCCTGGGGAGTG
GCTCTGGGAAGCCAATGGAATGCCATCCTCCTGCAGGACACCCTTTTAGG
AACTCCTCTCCTGCAACTCCTCTCTTCCTTCTTGCTAGGAAGGGTTATAA
GTTCGCAACTCTGACCCTCACCCGCTATAACACTTGGATATGAGACTTTT
TTTTTTTAAAACTTCTGTTACTCATAAAATCATTGTTGGGAATTTGTGCC
GATCTCTCTCTTGAGTATTAGCTTTATTACCTCTTTATTTTCCTCTTCCA
CTTTAACCCTTTATTACCATTTTCACCCCCAGTGGAACATGGGTATGAGT
GGACTCACCATACCACTAGGATTTTTGCTCTAACGCTGTGGACCGCTGTC
TATATTTTTGGGAAACCACAGCTTAGATCAAGTATTCCTCACGAATTCAG
CCCCATTCCTCCTTTCCGGGGTCTGCTGTGGAAGCGTCTGTTCCATGGGC
TAAGGCTTACCCCCTTCACGAGGTGTGTGGAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_p12.b1 MSMg01no503_p12.b1 CHROMAT_FILE:
MSMg01no503_p12.b1 PHD_FILE: MSMg01no503_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:25 2005
         (184 letters)



>mm_chr4_98587598_98588181
          Length = 584

 Score =  337 bits (174), Expect = 3e-97
 Identities = 180/182 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctaagctggtaggagtcgcaccaggtacagtggtgctcacctggaatccctcaccaag 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 tgctaagctggtaggagtcgcaccaggtacagtggtgcacacctggaatccctcaccaag 323

                                                                       
Query: 61  gaggctggggcagaagaactgccagaaattcagtgggttggcatgctttcatatattgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaggctggggcagaagaactgccagaaattcagtgggttggcatgctttcatatattgag 263

                                                                       
Query: 121 atataggtgttgtggtgtgttcctattatgcaagcacttgaaaggcttattcaagagact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 262 atataggtgttgtggtgtgttcctattatgcaagcacttgaaaggcttagtcaagagact 203

             
Query: 181 cg 182
           ||
Sbjct: 202 cg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)