TAAGGAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGCCATTCTCAATGGGAGCTTTTCTGTGAAATTCTAT
CCCAATTTGGTTCCAAGAGATTTAAAAATGTGTGTCAAACTCAGTTAGAG
GAGAGACACTATTTAAATCATACAGTTGGCTTCTTCATGGTGATCAAGAA
AGCCACCCTCTCCTAGCAGGAGACTGGGGTCAAAGCTGAACCCTTGAACT
TCACTCATTTAGTAGTTTTTTTTTCTTTAAACAAATAGAACAAATTACAT
TTGAATGAAATGTTATTTATAAAAATCCATAATATACATAGTTTAGTATT
CAATGAATATATTTAGACTATTGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGCTTATTGTGAGAAGGGAACTGTTCTGGTTTTAGGCTCAG
CCTCATACATTCTCAGAATTTCAAAAGCTGTTTGGGAAAAACAGCTCCAG
CAAGTAGGTAAAGCCTTCCTTCATCCCTTGCCTTTGTTTGGGTCCATGAG
AGAGAGAATGCAGCAGGGTTTCCCTGTGAGTAAACTGGTCTTCCCAAGAG
AAGAACTGAGTGATTCTGGAAGACAAGGAGTGTTTCTCATTTACAAAAAT
CAGGGACAACCTACTTAGCAGCACTGTCCTCCCACACTAGCAGGTAAGCA
GGACACCCCAAGGGCAGCACAGCAGGTATGGGCAGGGCAATTG

CTTATTTCCCTATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTTTTTATTTT
AAAATTTTAATATATATTTATTGATTTGATATATATATAATGATTTTACC
ATTCAGGAGAAAAGAATGTGAACTTGCTACTAATGAGATGGATATGTTTT
ATTACTTATTTTTTCTTTTTTTATATTTTCTTTATATACATTTCAAATGC
TATATTGAAAGTTCCCTATACCCTTCCTCTGTCCAGCTCCCCTACCCACC
CACTCCCACTTCTTGGCCCTGGTGTTTTTTTGTACTGAGGCATATAAAGT
TTGCAAGACCAAGGGGCCTCTCTTCCCAATGATGGCCGACTAGGCCATCT
TCTGCTATAAATGCAGCTAGAGATATGAGCTCTGGGGGTACTGGTTAGTT
CATATTGTTGTTCCTCCTATAGGGTTGCCAATCCCTTCAGCTCCTTGGGT
ACTTTCTCTAGCTTCTCCATTGGGGGCCCTGTGTTCCATCTTATAGATGA
CTGTGATCATCCACTTCTGTATTTGCCAGGTACTGGCATAGCCTCATACG
AGACAGCTATAATAGGGTCTCTCTGCTCAATTTTTTATCTGGGTATTTGA
GTTGATGGTGTCTAACTTCCTGAATTCTTTATATATTTTGGATATTAGCC
CTCTGCCAGATGTAAGGTTGGTGAAGATCTTTTTCCTATACTATAGGTTG
CT

Query= MSMg01no504_k07.b1 MSMg01no504_k07.b1 CHROMAT_FILE:
MSMg01no504_k07.b1 PHD_FILE: MSMg01no504_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:18 2005
         (479 letters)



>mm_chr4_8054165_8055041
          Length = 877

 Score =  795 bits (411), Expect = 0.0
 Identities = 468/501 (93%), Gaps = 26/501 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatgggagcttttctgtgaaattctatcccaatttggttccaagagatttaaaaatgtg 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 498 caatgggagcttttctgtgaaattctattccaatttggttccaagagatttaaaaatgtg 439

                                                                       
Query: 61  tgtcaaactcagttagaggagagacactatttaaatcatacagttggcttcttcatggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgtcaaactcagttagaggagagacactatttaaatcatacagttggcttcttcatggtg 379

                                                                       
Query: 121 atcaagaaagccaccctctcctagcaggagactggggtcaaagctgaacccttgaacttc 180
           ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 378 atcaagaaagccaccttctcctagcgggagactggggtcaaagctgaacccttgaacttc 319

                                                                       
Query: 181 actcatttagtagtttttttttctttaaacaaatagaacaaattacatttgaatgaaatg 240
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 actcatttagtag--tttttttctttaaacaaatagaacaaattacatttgaatgaaatg 261

                                                                       
Query: 241 ttatttataaaaatccataatatacatagtttagtattcaatgaatatatttagactatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttatttataaaaatccataatatacatagtttagtattcaatgaatatatttagactatt 201

                                                                       
Query: 301 ------------gagagagagagagagagagagagagagagagagagagagcttattgtg 348
                       ||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 200 gagagagagagagagagagagagagagagagagagagagagagagagagagtttattttg 141

                                                                       
Query: 349 aga--------agggaactgttctggttttaggctcagcctcatacattctcagaatttc 400
           |||        |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 agaagggaactagggaactgttctggttttaggctcagcctcatacattctcagaatttc 81

                                                                       
Query: 401 aaaagctgtttgggaaaaaca---gctccagcaagtaggtaaagccttccttcatccctt 457
           |||||||||||||| |||| |   ||||||||||||||| ||||||||||||||||||||
Sbjct: 80  aaaagctgtttggggaaaa-atgggctccagcaagtaggcaaagccttccttcatccctt 22

                                
Query: 458 gcctttgtttgggtccatgag 478
           |||||||||||||||||||||
Sbjct: 21  gcctttgtttgggtccatgag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 877
Length adjustment: 10
Effective length of query: 469
Effective length of database: 867
Effective search space:   406623
Effective search space used:   406623
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)