BAC Information

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BAC

Clone NameMSMg01-504P09
Chromosome4 (Build37)
Map Location 133,373,897 - 133,509,508
singlet/doubletdoublet
Overlap geneRps6ka1, 4930429E23Rik, LOC100042151
Upstream genePpp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a
Downstream geneHmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504P09.T7 (MSMg01no504_p09.b1)MSMg01-504P09.TJ (MSMg01no504_p09.g1)
ACCAG579714AG579715
length729750
length of high quality
(start - end)		675 (53 - 727)595 (85 - 679)
definitionCHROMAT_FILE: MSMg01no504_p09.b1 PHD_FILE: MSMg01no504_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:45 2005CHROMAT_FILE: MSMg01no504_p09.g1 PHD_FILE: MSMg01no504_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,509,124 - 133,509,508)(133,373,897 - 133,374,491)
sequence
TGTTGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCCTGTACCATGGAGATTCTCCAGATACTTAAAAGTTA
CACTCATATAAGAATTTAGCAAGGCCTAGGAATTAGGGGGGTTGTGATAT
TGCATTATTCATGAGGCCTGCCAAGAGCAGAACCCCCTGGTGCTGACCTT
CACAAGGTTCAAAGGTATAACACTAGAGTGTGAAATCCTTACCTGTCATT
AAGCTGACCCTAGGCAGGACTGCTTTATCTTTACTGTAAACATCTACCTG
GTTCCTGTAAATCCTTTTGAAGTCATTCCTTTGTTTCGTACCTGGTAACT
TCAATGTACCTTACCTGCTGTGACTTCCGACCCCTTGTACTATATAAGAT
TGATGTTCACTCTGTGAGAATACATTCAGATTCTACACAACCTCTCCTGT
GTGCATCTGTCTGTCATTCCCTCCAACTCTTTGCCCACCTGTGACCAGAG
ACCCGTTCTACGCAGACAAAGGGGCCCTGAGGGTCTGTGGCAATTTAGTG
TGCCAGTCATAGTGGCAGCTACCTGTAACCCTAGTGTTAGAGAGCTGGGG
TCATCCTGGGCTACATAGTGAGAGCCCCCATCTCCCAAAACAAAGAAGTC
ACTAGGCCTGTTAGTGCAGACATATAACTTTAAATATATGGGAGTCTGAG
ACAATAGGATTGTAAATTGCAGGCTAGCN

TTATNNAACGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTTGTCCTTGAACT
TACTTGCCTGTTTCCTTCCCCAGTGCTGGTTACTGTAATGGATGCTACTA
CCATAACCACCTCTACTACCTACGTCTCACCATGTCTGAATTTACCGGAG
TGATTATCTGATCTTGTGCTTATAGATTTACTTATTAAATTTTGAGGGCA
GGCCTTGCTGTGTACTCCCTGCTGGCTTCAATCACCATGAGAGATAGCCT
AGGCAAGCATCCTACCAAATTACATTTGTCTTCAGTCCCCTAAGTTATTT
TGCTTTTGGGGGAAAAAAAAAATCAAACAAAAGTAGGCAGGCCTGACTGA
GCTGGAGAGATGGCTCAGTAAAAAGCACTTGCAGAGAATAAACATGGTTC
TTTTCCCAGCACCCATGGTGGCTCACAACCACTTGTAACTTCAGTTCCAG
GGCATCCAGTCCTGGTCCTCTTTGGACACCAGTCATGAACCTGATTCACA
TACCTATGTGCAGGTACTCATGCATGTACATTAAATAATAGTATTTTTAT
AATACAAAATATTTTAAAATGTAATATAAAATAATACATAGTAAAAACAA
GCAAACAAATGAGAGTATAGATGGTCTCAATAAAGAACTTTTTTGTTTTG
CTTTGTTTTGTTTTTTGGGTTTTCAAGACAGGGTTTCTCTGTAGGCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_p09.b1 MSMg01no504_p09.b1 CHROMAT_FILE:
MSMg01no504_p09.b1 PHD_FILE: MSMg01no504_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:45 2005
         (675 letters)



>mm_chr4_133508434_133509508
          Length = 1075

 Score =  737 bits (381), Expect = 0.0
 Identities = 384/385 (99%)
 Strand = Plus / Minus

                                                                        
Query: 291  tggtaacttcaatgtaccttacctgctgtgacttccgaccccttgtactatataagattg 350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 tggtaacttcaatgtaccttacctgctgtgacttccgaccccttgtactatataagattg 1016

                                                                        
Query: 351  atgttcactctgtgagaatacattcagattctacacaacctctcctgtgtgcatctgtct 410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 atgttcactctgtgagaatacattcagattctacacaacctctcctgtgtgcatctgtct 956

                                                                        
Query: 411  gtcattccctccaactctttgcccacctgtgaccagagacccgttctacgcagacaaagg 470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955  gtcattccctccaactctttgcccacctgtgaccagagacccgttctacgcagacaaagg 896

                                                                        
Query: 471  ggccctgagggtctgtggcaatttagtgtgccagtcatagtggcagctacctgtaaccct 530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895  ggccctgagggtctgtggcaatttagtgtgccagtcatagtggcagctacctgtaaccct 836

                                                                        
Query: 531  agtgttagagagctggggtcatcctgggctacatagtgagagcccccatctcccaaaaca 590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835  agtgttagagagctggggtcatcctgggctacatagtgagagcccccatctcccaaaaca 776

                                                                        
Query: 591  aagaagtcactaggcctgttagtgcagacatataactttaaatatatgggagtctgagac 650
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 775  aagaagtcactaggcctgttagtgcagacatataactttaaatatatgggagtctgaaac 716

                                     
Query: 651  aataggattgtaaattgcaggctag 675
            |||||||||||||||||||||||||
Sbjct: 715  aataggattgtaaattgcaggctag 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no504_p09.g1 MSMg01no504_p09.g1 CHROMAT_FILE:
MSMg01no504_p09.g1 PHD_FILE: MSMg01no504_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:45 2005
         (595 letters)



>mm_chr4_133373697_133374691
          Length = 995

 Score = 1151 bits (595), Expect = 0.0
 Identities = 595/595 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggttgtccttgaacttacttgcctgtttccttccccagtgctggttactgtaatggatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggttgtccttgaacttacttgcctgtttccttccccagtgctggttactgtaatggatg 260

                                                                       
Query: 61  ctactaccataaccacctctactacctacgtctcaccatgtctgaatttaccggagtgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctactaccataaccacctctactacctacgtctcaccatgtctgaatttaccggagtgat 320

                                                                       
Query: 121 tatctgatcttgtgcttatagatttacttattaaattttgagggcaggccttgctgtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatctgatcttgtgcttatagatttacttattaaattttgagggcaggccttgctgtgta 380

                                                                       
Query: 181 ctccctgctggcttcaatcaccatgagagatagcctaggcaagcatcctaccaaattaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccctgctggcttcaatcaccatgagagatagcctaggcaagcatcctaccaaattaca 440

                                                                       
Query: 241 tttgtcttcagtcccctaagttattttgcttttgggggaaaaaaaaaatcaaacaaaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgtcttcagtcccctaagttattttgcttttgggggaaaaaaaaaatcaaacaaaagt 500

                                                                       
Query: 301 aggcaggcctgactgagctggagagatggctcagtaaaaagcacttgcagagaataaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcaggcctgactgagctggagagatggctcagtaaaaagcacttgcagagaataaaca 560

                                                                       
Query: 361 tggttcttttcccagcacccatggtggctcacaaccacttgtaacttcagttccagggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggttcttttcccagcacccatggtggctcacaaccacttgtaacttcagttccagggca 620

                                                                       
Query: 421 tccagtcctggtcctctttggacaccagtcatgaacctgattcacatacctatgtgcagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccagtcctggtcctctttggacaccagtcatgaacctgattcacatacctatgtgcagg 680

                                                                       
Query: 481 tactcatgcatgtacattaaataatagtatttttataatacaaaatattttaaaatgtaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tactcatgcatgtacattaaataatagtatttttataatacaaaatattttaaaatgtaa 740

                                                                  
Query: 541 tataaaataatacatagtaaaaacaagcaaacaaatgagagtatagatggtctca 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tataaaataatacatagtaaaaacaagcaaacaaatgagagtatagatggtctca 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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