BAC Information

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BAC

Clone NameMSMg01-505A16
Chromosome4 (Build37)
Map Location 146,022,719 - 146,023,373
singlet/doubletsinglet
Overlap genenone
Upstream gene9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093
Downstream geneOTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505A16.T7 (MSMg01no505_a16.b1)MSMg01-505A16.TJ (MSMg01no505_a16.g1)
ACCAG579776AG579777
length758764
length of high quality
(start - end)		655 (73 - 727)623 (79 - 701)
definitionCHROMAT_FILE: MSMg01no505_a16.b1 PHD_FILE: MSMg01no505_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:51 2005CHROMAT_FILE: MSMg01no505_a16.g1 PHD_FILE: MSMg01no505_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCATTTACCTCAGACCAAAAAAGTATAGAAATTTGAATTG
TCCTAATTTTACAATGCATTACAATTATCATTTCTATGTTTATTAACATA
CACAGAGGTATGAATAGAGTGGTGATCTCATCATTCATATGCACAGTTCA
ATAAATTATAAAATCCCTAATATTTATTCTTATATAGAAAGTCAATTACA
TGGTCATTAGGAAAATCTTGAAGATAAATCTTGAAATAGGAAAATAATAT
TTAAAATAGTTTCATACAAAATTGATTATACAGACAGAATATGAAGAAGA
AAATTCATACCATATTTTTCCATACATTTTCAATGATTTCTTTTTTTTTT
AATTTTAGCAGAGTTTTACCTCTTTACAGAGCATATGTGTAATATGCTCT
GTGCTGTTGCTAACTGGACTCAGAAAAAGGCATCAGATGTCCCAAACTGA
CATTTAGGGTGGTTGACAGGCACCATGGGGGTCAGGCATTGAACAAGTTT
TCTATTTAAAAGATGGTGTTAGCTCCCTTGTCAAAGATCAAGTGACCATA
GGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCTTTGGTCTACCT
ATCTGTCGCTATACCAGTACCATGCAGTTTTAAATCACAATTGCTCTGTA
GTACCGCTTTAGGTCAGGCATGGTGATTCCACCAGAAGATCTTTTATCAT
TGAGAAGA

CCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACATAATAGTGAGCTGCAAT
ATATTTAGAGAGAATTAGATTAGTTTTTAAAGTAGAAACAGCAAGTACCT
TTACCCTTTAATCATTTGTTCATGGCGAAGGCTTACATTTTTTGAGGCAT
ATTTGCAATAAAGACAACATATAGTCTGTATATTATAATTTTTGATAAAC
AAAGGAAGAATTACAAATCATACTTCTCTATGAAAGATGCAATTCTGATA
TACATATGGTCAAATTCTGAAGAAAAAAATATAATTAGAAGATTGAAATT
TTCAGTTAAGTTAATACAGTGATGAATAATTCATTAAATTTTAATGAATA
TTTAGTATAATTCTCCCTGAATTTAAAAACACAATTTGATCAAGAAATGA
TTATACTTCATTGGAATGCATTGTCACATATGTTATGTGCGTATACATAC
ATATCTAATCATTTTATAGTGAAAGACCATATGGTATTATTGAAATTGTT
ATTATGCATATTGATTATGCCAACATATGTAAAATGTTCAATAATTTTAA
AGCTCCCTAATACTGTTTTTTTTTCTATTTTATGATTTTGAATATATTTT
CATAAAATAATTTCCAAAAGCTTTTGTTTTTCTGTCATATGGAACGTTCA
GTGTATGATGCCCTGATGTTGCAGTTCTAGTGTGTTTAAAGAANAAACTT
AGTCATTTAGTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_a16.b1 MSMg01no505_a16.b1 CHROMAT_FILE:
MSMg01no505_a16.b1 PHD_FILE: MSMg01no505_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:51 2005
         (655 letters)



>mm_chr4_146022685_146023739
          Length = 1055

 Score = 1266 bits (655), Expect = 0.0
 Identities = 655/655 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaccaaaaaagtatagaaatttgaattgtcctaattttacaatgcattacaattatcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gaccaaaaaagtatagaaatttgaattgtcctaattttacaatgcattacaattatcatt 630

                                                                       
Query: 61  tctatgtttattaacatacacagaggtatgaatagagtggtgatctcatcattcatatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tctatgtttattaacatacacagaggtatgaatagagtggtgatctcatcattcatatgc 570

                                                                       
Query: 121 acagttcaataaattataaaatccctaatatttattcttatatagaaagtcaattacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 acagttcaataaattataaaatccctaatatttattcttatatagaaagtcaattacatg 510

                                                                       
Query: 181 gtcattaggaaaatcttgaagataaatcttgaaataggaaaataatatttaaaatagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtcattaggaaaatcttgaagataaatcttgaaataggaaaataatatttaaaatagttt 450

                                                                       
Query: 241 catacaaaattgattatacagacagaatatgaagaagaaaattcataccatatttttcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 catacaaaattgattatacagacagaatatgaagaagaaaattcataccatatttttcca 390

                                                                       
Query: 301 tacattttcaatgatttcttttttttttaattttagcagagttttacctctttacagagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tacattttcaatgatttcttttttttttaattttagcagagttttacctctttacagagc 330

                                                                       
Query: 361 atatgtgtaatatgctctgtgctgttgctaactggactcagaaaaaggcatcagatgtcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atatgtgtaatatgctctgtgctgttgctaactggactcagaaaaaggcatcagatgtcc 270

                                                                       
Query: 421 caaactgacatttagggtggttgacaggcaccatgggggtcaggcattgaacaagttttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 caaactgacatttagggtggttgacaggcaccatgggggtcaggcattgaacaagttttc 210

                                                                       
Query: 481 tatttaaaagatggtgttagctcccttgtcaaagatcaagtgaccataggtgtgtgggtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tatttaaaagatggtgttagctcccttgtcaaagatcaagtgaccataggtgtgtgggtt 150

                                                                       
Query: 541 catttctgggtcttcaattctattcctttggtctacctatctgtcgctataccagtacca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 catttctgggtcttcaattctattcctttggtctacctatctgtcgctataccagtacca 90

                                                                  
Query: 601 tgcagttttaaatcacaattgctctgtagtaccgctttaggtcaggcatggtgat 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  tgcagttttaaatcacaattgctctgtagtaccgctttaggtcaggcatggtgat 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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