BAC Information

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BAC

Clone NameMSMg01-505F13
Chromosome4 (Build37)
Map Location 145,588,905 - 145,589,378
singlet/doubletsinglet
Overlap genenone
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505F13.T7 (MSMg01no505_f13.b1)MSMg01-505F13.TJ (MSMg01no505_f13.g1)
ACCAG580008AG580009
length780778
length of high quality
(start - end)		636 (49 - 684)324 (328 - 651)
definitionCHROMAT_FILE: MSMg01no505_f13.b1 PHD_FILE: MSMg01no505_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:14 2005CHROMAT_FILE: MSMg01no505_f13.g1 PHD_FILE: MSMg01no505_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:14 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTACTTCATGTTCCCTGTGCCTTCCAACCTGTGTGTCTGTT
CAGTTAGTTTAAATCTGTAACTTCCTGAAGGCTGCCTTGAGTATCTCTCC
CTTTCTGTCTGCCTTTGTCTCCATGTTTGTGTCTACCTGTGTAATCTGTT
GTCTGTTTGTATCTCTCTGGCTGACCTTAATAGAGAGCTTTGGAGTGTTT
CTAGAACATCAAGGGAACCATCACATGGGGGAAAGAATGGGATAGTGAAC
AATAATCTTTAACAGAGTTTTATAAAGGATTAGGTAACTGGGTCCACATG
ATCAAGACAATAAACATTTATAAACATGACTTTTATCAACCATACCCATA
ACTGTTTATGCATTTTGAAATGTGCTTTAAGCCTGTATTTCATGCTTTCA
GTAAATGACTCACATGCAGTTTCTGGGCAGGACATGAAAAAGTACATAAA
TTATCATTTATCAACGCATCAAGTTAGATCTTTTATATAATACATTGTCA
CACTTATGGTTCTGCTAATGCATAGGAAAGCACCATGGAGCAAGACTTCA
TGGAGTTCTGCTCGATATATTCTTCATAAGATGTTTGCAAAAAAATTTTT
TTCTTTGAAAAGTACGACTTTATAAGTGTATGAAGATGATTCAAATGAAG
TCTTTGAATACTGAANGAGATGGANGTCCAGTTGATCTTGTATTTTTCAC
GTGGTACATAAAAGGAGCTGCTAGGCAAAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACAGGAGAGAAATCTTACAAAT
GTAGTGAATGTGACAAATGCTTTACCCGAAAATTCCATCTTGGTATTCAT
CAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAA
ATCCTTTACCCACAAATCCCATCTTAATAATCATCAGAGAATTCATACAG
GAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACTGAAAAA
GGCAGTCTGAGAATTCATCATATTATTCATACAGGAGAGAAACCTTACAA
ATGCAGTGGATGTGACAAATGCTTTACTAAAAAAAGCAGTCTGAGAATTC
ATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGAC
AAATGCTTTACTACAAAAGGCAATCTGATAATTCATCAGAGAATTCATAC
AAGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACCCACA
AATGCCATCTTAATAATCATCAGAAAATTCATACAGGAGAGAAACCTTAC
AAATGCAGTGAATGTGACAAATGCTTTACTGAAAAAGGCAGTCTGAGAAT
TCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGGATGTG
ACAAATGCTTTACTCAAAAAAGCAGTCTGAGAATTCATCAGAGAATTCAC
ACAGGAGAGAAACCTTACAAATGCAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_f13.b1 MSMg01no505_f13.b1 CHROMAT_FILE:
MSMg01no505_f13.b1 PHD_FILE: MSMg01no505_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:14 2005
         (636 letters)



>mm_chr4_145588887_145589922
          Length = 1036

 Score =  520 bits (269), Expect = e-151
 Identities = 428/495 (86%), Gaps = 41/495 (8%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctacttcatgttccctgtgccttccaac--ctgtgtgtctgttcagttagttt 62
           |||||||||||||||||||||||||| |||||| |  |||||||||||||||||||||||
Sbjct: 19  gaattctctacttcatgttccctgtg-cttccatcctctgtgtgtctgttcagttagttt 77

                                                                       
Query: 63  aaatctgtaacttcctgaaggctgccttgagtat--ctctccctttctgtctgcc-tttg 119
           |||||||||||||||||||||||| |||  ||||  ||||||||||||||||||| ||||
Sbjct: 78  aaatctgtaacttcctgaaggctg-ctt--gtatagctctccctttctgtctgccttttg 134

                                                                       
Query: 120 tctccatgtttgtgtctacctgtgtaatctgttgtctgtttgtatctctctggctgacct 179
           |||||||||| ||||    |||||||||||||||||||||||| |||||||| ||| |||
Sbjct: 135 tctccatgttggtgt----ctgtgtaatctgttgtctgtttgtgtctctctgactggcct 190

                                                                       
Query: 180 taatagagagctttggagtgtttctagaacatcaagggaaccatcacatgggggaaagaa 239
           | | |||||||||||||||  |||||||||||||||||| ||||||||| ||||||||||
Sbjct: 191 tgagagagagctttggagtacttctagaacatcaagggatccatcacat-ggggaaagaa 249

                                                                       
Query: 240 tgggatagtgaacaataatctttaacagagttttataaaggattaggtaactgggtcc-a 298
           ||||| |||||||| |||||          |||||||||||||||||||||||| ||| |
Sbjct: 250 tgggacagtgaacagtaatc----------ttttataaaggattaggtaactggctccga 299

                                                                       
Query: 299 -----ca--t-gatcaagacaataaacatttataaacatgacttttatcaacca-taccc 349
                ||  | || |||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 300 gtggtcaagtgga-caagacaacaaacatttataaacatgacttttatcaaccaataccc 358

                                                                       
Query: 350 ataactgtttatgcatttt-gaaatgtgctttaagcctgt--atttcatgctttcagt-a 405
           |||||||| ||| |||||| ||| | |||||||||||| |  |||||||||||||| | |
Sbjct: 359 ataactgtatattcatttttgaactatgctttaagcctctgcatttcatgctttca-tca 417

                                                                       
Query: 406 aatgactcacatgcagtttctgggcaggacatgaaaaagtacataaattatcattt-atc 464
           |||||| | ||||||||||||| ||||||| ||||||||||||||||||| ||||| |||
Sbjct: 418 aatgacactcatgcagtttctgagcaggacttgaaaaagtacataaattaccattttatc 477

                          
Query: 465 aacgcatcaagttag 479
            | ||||||||||||
Sbjct: 478 tatgcatcaagttag 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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