BAC Information

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BAC

Clone NameMSMg01-505G05
Chromosome4 (Build37)
Map Location 44,643,167 - 44,643,800
singlet/doubletsinglet
Overlap genePax5
Upstream geneNpr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk
Downstream gene5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505G05.T7 (MSMg01no505_g05.b1)MSMg01-505G05.TJ (MSMg01no505_g05.g1)
ACCAG580040AG580041
length750759
length of high quality
(start - end)
459 (70 - 528)634 (75 - 708)
definitionCHROMAT_FILE: MSMg01no505_g05.b1 PHD_FILE: MSMg01no505_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:17 2005CHROMAT_FILE: MSMg01no505_g05.g1 PHD_FILE: MSMg01no505_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGATTTCTCTCATGGCTCTTCCTCTCCATCCTCCTCCTCC
TCCCGCTTCTCCTTACTTACTTTTTCCTTCTCTTCCCTTTCCCCTCTTCT
CTCTTCCCTTTCCTCGTCTTCTTCCTCTTTCTCCCCTTGCTCCTCCTATT
CTTTGTCCTTCTCCTCTTCATCCTGAAGTCCCACAGCGACATGGGCTTGA
ACTTGGTTCCCACTTGGCCTAGGAGACAGTGTCTCTGGAAAAGGTTTTGC
CTGTAGTCAGCATGGCCTGGGTTTTGAATACTGTTCACTTCATGAGCTTG
TGGCCTTGGGCAAGTAAACTTGCTATCCCTCATTTGCTTTTTAGGGCTTC
TAAGAATATCTGGGGAGCTAATCTGTATAACATTCTTCGTGCAGACATAG
GAAGGCTGCCATAAATGTAGATAGCTGTGTTGGTTATTGTTGTTGTTGTT
GTTGTTGTTGTTGGTGGTGGTGGTGGTGNNTANAAATNATATATTTTTTT
ATTTTTATTTTATTATTATTTTTTTTTATTTTTTATTTTTTATTTTATAT
TATATTATAATTTTTTTTTTATTATTTTTTTATGTTTTTTTTTAAATTTT
ATTTTATTTATATAAAAATATTTGTTTATTNATTTTATTTTTTTTTTTGT
GTTGTTTTTAGGGGTGTTTTGACTGATGTTTTTTTATTTGAGGTCGTTTN

NCCACAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGTCTCAAAGAATTCCTTCCCTTTTCCTGAGTCATCT
GCAAAGATGTGACTTGTGTATGTGTGAGTGTGTGGTGGCTGAACTAACTC
GCAAACTAAGCTACACCTCCAGGAACATTGAAGGTAGCAAATGCTCCATT
GTAAGACCAAGTTCTGGCTTTCAAAAGGAGCTCTAGGTGTGTAAACCTCC
TGGATAATGCCCTGGAGATCAGGGGTAGCCATTTGAAATGAGGGCTGGGA
GACGGGCCCGGAGCCACTGTCTGTTTGATGCTATGAGGCAGTCTGGTGGG
CGCTGTGGAGTATCTGGGTACACCTGTGACCTGCACCCACCTCAAGGCTG
TGTCTCTGGAAATGCATGCTCAGCTGCCCTGTAGACAAACCAGAATCCTA
CAAGGCCATGTGATGCTGCTCACAGGCCAGGGAATGCAGAGAAAAGAGTG
TGAATCTGTGGAATTGGGGCAGGGAGAACTGAGGTGGAGAAGAATAAACA
GAATAAGCAGAGCTGGGGCATCTGAACTGGAAAAGGTCCTGCCCACGGAA
GCAGAAAGCCCTAAGTGGGACAACTGGAGGCTCAGTGTGGAGAAGGAAGG
CTCTGAACAAGGCTGGCAGGATTTCCCCATCTCTGCTGAATTACAGAGGC
TGTTGCAGCCTCACCAGGCAAGTCCAGACCAGACCACAACTGGTCCTTTC
ACGCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_g05.g1 MSMg01no505_g05.g1 CHROMAT_FILE:
MSMg01no505_g05.g1 PHD_FILE: MSMg01no505_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:17 2005
         (634 letters)



>mm_chr4_44642967_44644000
          Length = 1034

 Score = 1133 bits (586), Expect = 0.0
 Identities = 622/634 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccttcccttttcctgagtcatctgcaaagatgtgacttgtgtatgtgtgagtgtgtg 60
           |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 attctttcccttttactgagtcatctgcaaagatgtgacttgtgtatgtgtgagtgtgtg 775

                                                                       
Query: 61  gtggctgaactaactcgcaaactaagctacacctccaggaacattgaaggtagcaaatgc 120
           |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 774 gtggctaaactaactcgcaaactaagctacacctccaggaacatcgaaggtagcaaatgc 715

                                                                       
Query: 121 tccattgtaagaccaagttctggctttcaaaaggagctctaggtgtgtaaacctcctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tccattgtaagaccaagttctggctttcaaaaggagctctaggtgtgtaaacctcctgga 655

                                                                       
Query: 181 taatgccctggagatcaggggtagccatttgaaatgagggctgggagacgggcccggagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 taatgccctggagatcaggggtagccatttgaaatgagggctgggagacgggcccggagc 595

                                                                       
Query: 241 cactgtctgtttgatgctatgaggcagtctggtgggcgctgtggagtatctgggtacacc 300
           ||||| ||||  ||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 594 cactgcctgtgggatgctatgagtcagtctggtgggcgctgtggagtatctgagtacacc 535

                                                                       
Query: 301 tgtgacctgcacccacctcaaggctgtgtctctggaaatgcatgctcagctgccctgtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgtgacctgcacccacctcaaggctgtgtctctggaaatgcatgctcagctgccctgtag 475

                                                                       
Query: 361 acaaaccagaatcctacaaggccatgtgatgctgctcacaggccagggaatgcagagaaa 420
           ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 474 acaaaccagaaccctacaaggccatgtgatgctgctcataggccagggaatgcagagaaa 415

                                                                       
Query: 421 agagtgtgaatctgtggaattggggcagggagaactgaggtggagaagaataaacagaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agagtgtgaatctgtggaattggggcagggagaactgaggtggagaagaataaacagaat 355

                                                                       
Query: 481 aagcagagctggggcatctgaactggaaaaggtcctgcccacggaagcagaaagccctaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aagcagagctggggcatctgaactggaaaaggtcctgcccacggaagcagaaagccctaa 295

                                                                       
Query: 541 gtgggacaactggaggctcagtgtggagaaggaaggctctgaacaaggctggcaggattt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gtgggacaactggaggctcagtgtggagaaggaaggctctgaacaaggctggcaggattt 235

                                             
Query: 601 ccccatctctgctgaattacagaggctgttgcag 634
           ||||||||||| ||||||||||||||||||||||
Sbjct: 234 ccccatctctgatgaattacagaggctgttgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)