BAC Information

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BAC

Clone NameMSMg01-505K08
Chromosome4 (Build37)
Map Location 134,434,309 - 134,434,937
singlet/doubletsinglet
Overlap geneRhd
Upstream geneRps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57
Downstream geneTmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505K08.T7 (MSMg01no505_k08.b1)MSMg01-505K08.TJ (MSMg01no505_k08.g1)
ACCAG580234AG580235
length745752
length of high quality
(start - end)
632 (52 - 683)411 (330 - 740)
definitionCHROMAT_FILE: MSMg01no505_k08.b1 PHD_FILE: MSMg01no505_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:36 2005CHROMAT_FILE: MSMg01no505_k08.g1 PHD_FILE: MSMg01no505_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGGGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGCTTTTACCGGAACTCCCCAGGTGTTGTCTCTATCCTA
GACAGGAAGTCATCCAAGGTCCCGATAGTGCTCAGTCAGCCTTTTAAAAT
CCCCCCCCCCCACCTTATTTTTTCAAGACAGAGTTTCATTTGCTGTGTTG
CCCTGGCTGTTCTGGAACTCACTCTGTAGAGCAGGCTGGCTTCGAACTCA
CAGACATCCTCCTACCTCTGCCTCTGGAGTGCTGGGATTAAAACACATGC
CACCACTGCCCGGCTGAATCAGGCTTTTTAACCACCATGTCAGGGTCTTC
CCACACTGCCCACTGCCCAGTGATTTCTGTACTGAGCTTGTCAGAGCAGT
AAGCACTCACTCATCAAGAATAGCCTGTCTGGTCGCAGTGACCACCGAGA
TTCCCCACATACTGAGTCACTCCTGGTCCACACAGGACCTCTTCCCCATG
TCCTTCTCTTACCTTCCCCTCACACCTTTGAGCCTCATGAACAACAGTGA
TCGCTGGGAAGGCTGTGTGCAGACGAGTGGACTCTGGCTTTAGATCTGGC
TTCAGATCTGGGACCTGAATCTCATGTTTGTTATCAGTAGGTACTAGCCA
TCCTTCCGACTCCCTAGCTTCTTGTACACTACAGAANACATAGTGCCGAC
CTAGCAATCCCTGCTGATGGAGGGCTGACCTTTAACCTTGGACAN
AAGCCCGATGACAGTGGGTAGGCCTGGNNGGCCGCCTTTTCAAAAAGTGG
AGGTGACACTATAGAATGACAACAAAGAGATCCTGCCAGATTGTGAAGGA
GCCTGGAGCTAACCGGCTGATTACAAATGGCCTCGCCACGGACCAGCAAA
AACCACAAAGGCATGTGTGATGTCACCCTGAAAGAGCCAGGCTGCACTTG
AGACTTTCAAACTGTGCCGGAATCATTAAAGGCTATGGAGACTTTGGACG
TTAAGGCTCGATGCATTTTGCATTAGAAGACGGCCATGAGTCTCTGGGGA
CAAGAGGAGGCCAGGATGGTTTTTGATTGATGTGTTTGGGGGTGAAGCTG
CCAAGCGGTGGAGATGCGATGCTAACCATTTCCTACTTGACAGAATCTAG
AGTTACCTAGGAGGCCAGCCGCTGGGCGTGCCTCGGAGGGAGTATTGAGA
TGAGAGTGCTGGAGATGCAAAGGCCCGCTCTAGTTGTGAGTGGCATCCTT
TCACCAGCTGGAGTCCCAGACTGAATAAAGAGGAGAAAGCAAGCTGAGCA
TCTTCATTTATAGTTCCCTGCCTCTGCACTGAAGCTGAAGGGCCACCTCA
AACTCTAGCTACCGCGCCTGCCCCAACCTGACAGACCGTGAGCTCAAAGA
AACCCTCTTTCATAGTTGCTTCTGCCAGGCGTCTCCTTGCAGCAAGGAGA
TACATAGCTAACACTGCTGTTTCCAGATGGGCCACATTTCTTCAGAGCTG
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_k08.b1 MSMg01no505_k08.b1 CHROMAT_FILE:
MSMg01no505_k08.b1 PHD_FILE: MSMg01no505_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:36 2005
         (632 letters)



>mm_chr4_134434105_134435136
          Length = 1032

 Score = 1137 bits (588), Expect = 0.0
 Identities = 619/630 (98%), Gaps = 3/630 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcttttaccggaactccccaggtgttgtctctatcctagacaggaagtcatcc 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgctcttaccggaactccccaggtgttgtctctatcctagacaggaagtcatcc 264

                                                                       
Query: 65  aaggtcccgatagtgctcagtcagccttttaaaatcccccccccccaccttattttttca 124
           |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 aaggtcccgatattgctcagtcagccttttaaaatccccccccccc-ccttattttttca 323

                                                                       
Query: 125 agacagagtttcatttgctgtgttgccctggctgttctggaactcactctgtagagcagg 184
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 324 agacagagtttcatttgttgtgtagccctggctgttctggaactcactctgtagagcagg 383

                                                                       
Query: 185 ctggcttcgaactcacagacatcctcctacctctgcctctggagtgctgggattaaaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctggcttcgaactcacagacatcctcctacctctgcctctggagtgctgggattaaaaca 443

                                                                       
Query: 245 catgccaccactgcccggctgaatcaggctttttaaccacc--atgtcagggtcttccca 302
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 444 catgccaccactgcccggctgaatcaggctttttaaccaccccatgtcagggtcttccca 503

                                                                       
Query: 303 cactgcccactgcccagtgatttctgtactgagcttgtcagagcagtaagcactcactca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cactgcccactgcccagtgatttctgtactgagcttgtcagagcagtaagcactcactca 563

                                                                       
Query: 363 tcaagaatagcctgtctggtcgcagtgaccaccgagattccccacatactgagtcactcc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcaagaatagcctgtctggtcgcagtgaccaccgagattccccacatactgagtcactcc 623

                                                                       
Query: 423 tggtccacacaggacctcttccccatgtccttctcttaccttcccctcacacctttgagc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggtccacacaggacctcttccccatgtccttctcttaccttcccctcacacctttgagc 683

                                                                       
Query: 483 ctcatgaacaacagtgatcgctgggaaggctgtgtgcagacgagtggactctggctttag 542
           |||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 684 ctcatgaacaacagtgattgctaggaaggctgtgtgcagatgagtggactctggctttag 743

                                                                       
Query: 543 atctggcttcagatctgggacctgaatctcatgtttgttatcagtaggtactagccatcc 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atctggcttcagatctgggacctgaatctcatgtttgttatcagtaggtactagccatcc 803

                                         
Query: 603 ttccgactccctagcttcttgtacactaca 632
           ||||||||||||||| ||||||||||||||
Sbjct: 804 ttccgactccctagcctcttgtacactaca 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)