BAC Information

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BAC

Clone NameMSMg01-505N02
Chromosome4 (Build37)
Map Location 24,164,153 - 24,164,806
singlet/doubletsinglet
Overlap geneLOC664973
Upstream geneLOC625462, LOC383998, LOC100040464, LOC623873
Downstream geneF730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505N02.T7 (MSMg01no505_n02.b1)MSMg01-505N02.TJ (MSMg01no505_n02.g1)
ACCAG580362AG580363
length753747
length of high quality
(start - end)
691 (49 - 739)654 (71 - 724)
definitionCHROMAT_FILE: MSMg01no505_n02.b1 PHD_FILE: MSMg01no505_n02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:49 2005CHROMAT_FILE: MSMg01no505_n02.g1 PHD_FILE: MSMg01no505_n02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCACTTGCTTCAGAGCTACTAAGAGCTGGCTCCCCGAGCCC
ATCCAGCGATGAGCACAGGCTCCTTTTCCTAGAGACCTCCGCTAATTGAT
CTTTCTTCTTTTCCCTTTTTCCTCTTTTTCTTCTAATCTCTCTCCAGGTA
TTCCTACCTAACCTTAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCC
TGTATACTTATTTTGTGTACCATATTTCCTCTTTGTTCCTACTCTCTCTC
CCCGCTTTACTTCTGATAGCTTGTCCTGAATTTCCTCTAGAATCCGCCCT
GCCTTAACCACTTGATAACATGTGAAAAGGAACAAAAGGGCTTCTAACAC
TAGAAAAAATTCAAGGCCAAATATACCTTGCAAAGCCATTTTCCACTTTA
CTTCTGATAGACTGTCTTGAATTTCCTTAGAAAGTTCAAGATCAGACTTA
CCTCGTAAAGCTGTACTCACTGGTACTCTCGTTCCCCAGCTGAAAAGTTC
TGAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTT
TATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCCTGCG
CCGGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTCTTATTAG
ACGCGTTCTCACGCCCGGCCAGGAAAGACGCAACAGACCAGAATCTTCTG
CGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTAGACTAACAACTGCCAGACCCTTGCCC
AAAATCTCTCCTTACTAGTTCTTGCCTAGAAACAGAACTGGACAACTACC
CCAGGTGGGAGGGATGGAGGCCAAATAAAAACTCCTGTTGAGATCTTCAG
GAACCCTAAATCCAGTCAGATTGTGGGTGGTTCTGCCAATCTTCTAGGTT
CACTGAGGTAAGCAGCAGCCACAGCTTCCCCTCCATCACATTTATCAAAA
TTTCTGAAGCTGTCAGTCAAGCAACAGCTTGCTCTGGAGTTCATCCAGTT
GTCTTCATGACAACTATCATCGCTTTAGACACCTCCTAGTTGCTGAAGGA
AACCCCCTGCCATCTAATCAATACTAGAGACATCAAACCAGCATTATCAC
CCAAAGACACACGCCACAGACACCCAAGTGACAGTCTTATGACCACCACT
TTTCTTCAGGAGACTTTTATGGCCACTCTATCAGAAATTCTAGGCACTTA
GGCTATAAGAACTTTAGTTGACCCTCTGGTAAAACCTCTCCCCACCCTGC
CCACAGTTGCTTTGATACTTCCTTGAACCTATCCTGAGTCCAGTGATAAA
GAATGCCACCTTTACCAATGACAATTACTATGAAGGTATGACTGGATAGG
TAAGCAGCTCTCTTCATACTGTTCCTAGAACAGACCANGAGATGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_n02.g1 MSMg01no505_n02.g1 CHROMAT_FILE:
MSMg01no505_n02.g1 PHD_FILE: MSMg01no505_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:49 2005
         (654 letters)



>mm_chr4_24163953_24165006
          Length = 1054

 Score = 1226 bits (634), Expect = 0.0
 Identities = 649/654 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actagactaacaactgccagacccttgcccaaaatctctccttactagttcttgcctaga 60
           |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 actagactaacaactgccaggcccttgcccaaaatctctccttactagtccttgcctaga 260

                                                                       
Query: 61  aacagaactggacaactaccccaggtgggagggatggaggccaaataaaaactcctgttg 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcagaactggacaactaccccaggtgggagggatggaggccaaataaaaactcctgttg 320

                                                                       
Query: 121 agatcttcaggaaccctaaatccagtcagattgtgggtggttctgccaatcttctaggtt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 agatcttcaggaaccctaaatccagtcagattgtgggtggttctgccaatcttccaggtt 380

                                                                       
Query: 181 cactgaggtaagcagcagccacagcttcccctccatcacatttatcaaaatttctgaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgaggtaagcagcagccacagcttcccctccatcacatttatcaaaatttctgaagc 440

                                                                       
Query: 241 tgtcagtcaagcaacagcttgctctggagttcatccagttgtcttcatgacaactatcat 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 tgtcagtcaagcaacagcttgctctggagttcatccagttgtctgcatgacaactatcat 500

                                                                       
Query: 301 cgctttagacacctcctagttgctgaaggaaaccccctgccatctaatcaatactagaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgctttagacacctcctagttgctgaaggaaaccccctgccatctaatcaatactagaga 560

                                                                       
Query: 361 catcaaaccagcattatcacccaaagacacacgccacagacacccaagtgacagtcttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catcaaaccagcattatcacccaaagacacacgccacagacacccaagtgacagtcttat 620

                                                                       
Query: 421 gaccaccacttttcttcaggagacttttatggccactctatcagaaattctaggcactta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaccaccacttttcttcaggagacttttatggccactctatcagaaattctaggcactta 680

                                                                       
Query: 481 ggctataagaactttagttgaccctctggtaaaacctctccccaccctgcccacagttgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggctataagaactttagttgaccctctggtaaaacctctccccaccctgcccacagttgc 740

                                                                       
Query: 541 tttgatacttccttgaacctatcctgagtccagtgataaagaatgccacctttaccaatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttgatacttccttgaacctatcctgagtccagtgataaagaatgccacctttaccaatg 800

                                                                 
Query: 601 acaattactatgaaggtatgactggataggtaagcagctctcttcatactgttc 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acaattactatgaaggtatgactggataggtaagcagctctcttcatactgttc 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)