Query= MSMg01no506_b06.b1 MSMg01no506_b06.b1 CHROMAT_FILE:
MSMg01no506_b06.b1 PHD_FILE: MSMg01no506_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:08 2005
(426 letters)
>mm_chr4_121049928_121050751
Length = 824
Score = 458 bits (237), Expect = e-133
Identities = 341/379 (89%), Gaps = 12/379 (3%)
Strand = Plus / Plus
Query: 13 ggatttgaccttgctccacctcaccagccccacacccattcctctcctaccatgatccac 72
|||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||
Sbjct: 213 ggatttgaccttgctccacctcaccagccccatacccattcctctggtaccatgacccag 272
Query: 73 atgccataaaccactacaaatagaagaactaaaatatattttggtac--ctgtggcccat 130
|||||||| |||||| |||||||||||| |||||||| ||||||||| ||| ||||||
Sbjct: 273 atgccatataccactccaaatagaagaattaaaatat-ttttggtactcctg--gcccat 329
Query: 131 tataatcagcataattcataatacacgcaataatgtctactccattggcatcatttgaaa 190
| |||||||||||||||||||||||| || ||| |||||||||||||||||| |||||||
Sbjct: 330 tttaatcagcataattcataatacacacactaaagtctactccattggcatcgtttgaaa 389
Query: 191 aattactttaaaaatcctcctgacacttcacttcaggcaatc-tatgtcccttattcctc 249
|||| ||| ||||| ||||||| |||||||||||| ||||| |||||||||||||||||
Sbjct: 390 aattccttaaaaaa--ctcctgaaacttcacttcagacaatcatatgtcccttattcctc 447
Query: 250 taaaacctagtcaacctggatttcacatattctagaaaactctgatgaccaataggtgac 309
||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 448 taacacctactcaacctggatctcacatattctagagaactctgatgaccaataggtgac 507
Query: 310 tatgtgctccccaacataaagtctaaacttaacacttctctctccctctccttctggccc 369
|| |||||||||||||||||| ||||||||||||||||||||| |||||||||| |||
Sbjct: 508 taagtgctccccaacataaagcctaaacttaacacttctctctacctctccttcc--ccc 565
Query: 370 tgtctccctctccctcctt 388
| |||||||||| |||||
Sbjct: 566 tttctccctctc--tcctt 582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 824
Length adjustment: 9
Effective length of query: 417
Effective length of database: 815
Effective search space: 339855
Effective search space used: 339855
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_b06.g1 MSMg01no506_b06.g1 CHROMAT_FILE:
MSMg01no506_b06.g1 PHD_FILE: MSMg01no506_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:08 2005
(650 letters)
>mm_chr4_121762543_121763594
Length = 1052
Score = 255 bits (132), Expect = 6e-72
Identities = 283/346 (81%), Gaps = 29/346 (8%)
Strand = Plus / Minus
Query: 55 gtctcatgcctgcaactacagggctgaggtggcccaggaagttagatggcttcaagagga 114
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct: 494 gtctcatgcctgcaactacagggctgaggtagcccaggaagtaagatggcttcaagttga 435
Query: 115 aaggcaggtttgattatctagcctgtagtaagattgttgtaaatccctgagtattcttta 174
|||||||||||| ||||||| | | ||| ||| ||| ||||||||||| ||| ||||||
Sbjct: 434 gaggcaggtttgactatctagtcaggagtgagactgtagtaaatccctgcgtactcttta 375
Query: 175 atggtacctcacctaaaat-tcaaacgattagaaaaacaaacacaacaa---accccacc 230
|| ||||| || |||||| |||| | || ||||||||||||||||||| |||||||
Sbjct: 374 attgtaccccatctaaaaagtcaatcaatcagaaaaacaaacacaacaataaaccccac- 316
Query: 231 accagacacaaaagaaaggaagatagaaggtttc-tcaatcctcacataggtaagtcttt 289
|||||||||||| ||||| ||||||| |||| | |||||||||| |||| ||||||||
Sbjct: 315 accagacacaaaggaaagaaagataggaggt--catcaatcctcatatagaaaagtcttt 258
Query: 290 ttt------------gagcagactgg----gaatttttcagtagacctaaccatgtgtat 333
||| ||||||||||| ||||| || | |||| | |||||| |||
Sbjct: 257 tttttttttctttttgagcagactggtaatgaattatt--g--gacccagccatgtatat 202
Query: 334 gtgtgctgacaaatgcagttggaggctgatttt-aatatgggttaa 378
|||||||||||||||||||||||||||||||| ||| || |||||
Sbjct: 201 atgtgctgacaaatgcagttggaggctgatttttaatgtgagttaa 156
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1052
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1042
Effective search space: 666880
Effective search space used: 666880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
