Query= MSMg01no506_e24.b1 MSMg01no506_e24.b1 CHROMAT_FILE:
MSMg01no506_e24.b1 PHD_FILE: MSMg01no506_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:28 2005
(698 letters)
>mm_chr4_37358744_37359845
Length = 1102
Score = 528 bits (273), Expect = e-154
Identities = 321/339 (94%), Gaps = 4/339 (1%)
Strand = Plus / Minus
Query: 5 gaattcttcgccaagctgccctgcctggggcat----tgcagagtcaggtaccttgatat 60
|||| |||| ||||||||||||||||||| ||| ||||||||||||||| ||||||
Sbjct: 339 gaatccttcaccaagctgccctgcctgggtcataaacagcagagtcaggtaccctgatat 280
Query: 61 tcatagtcttgcccaccattaccctcaaacattttaagaagccctgctgccatgaggatc 120
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 279 ccatggtcttgcccaccattaccttcaaacattttaagaagccctgctgccatgaggatc 220
Query: 121 atcctgccaacaccaaccaaaaccagatgcctaaaggacggattaggaacaaaatcaaca 180
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 219 atcctgccaacaccaaccaaaacaagatgcctaaaggacagattaggaacaaaatcaaca 160
Query: 181 acatgcctggcaatatggcacttccagttctgaactatcctattacagcaaactgtgggt 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
Sbjct: 159 acatgcctggcaatatggcacttccagttctgagctatcctattacagcaaaccgtggat 100
Query: 241 atcctaatgaaaaatgaagcacaagatgatgatcataaattcaatctaataaaatgagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 atcctaatgaaaaatgaagcacaagatgatgatcataaattcaatctaataaaatgagag 40
Query: 301 aggactttaaataggaatggaataaatcctttgaagaaa 339
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 39 aggattttaaataggaatggaataaatcctttgaagaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1102
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1092
Effective search space: 751296
Effective search space used: 751296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_e24.g1 MSMg01no506_e24.g1 CHROMAT_FILE:
MSMg01no506_e24.g1 PHD_FILE: MSMg01no506_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:28 2005
(602 letters)
>mm_chr4_37322490_37323491
Length = 1002
Score = 1149 bits (594), Expect = 0.0
Identities = 600/602 (99%)
Strand = Plus / Plus
Query: 1 ccataatgaatgctctgtaaatgttagaattcacagctgatcatgtgactgtcttcattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccataatgaatgctctgtaaatgttagaattcacagctgatcatgtgactgtcttcattt 260
Query: 61 tgacatatcaataaatatagccacactcaaattataaaggcaatcttattattaaagtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacatatcaataaatatagccacactcaaattataaaggcaatcttattattaaagtta 320
Query: 121 ttttgtagttgtcagaattcatttctgaagagaaatgaagtaaagcaggtagccttgtta 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 ttttgtagttgtcagaattcatttctgaagagaaatgaagtaaaacaggtagccttgtta 380
Query: 181 ataaataatctcacttaaaacaattttatgaaaatcattgacctttccaaactatcaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaataatctcacttaaaacaattttatgaaaatcattgacctttccaaactatcaaat 440
Query: 241 ttactgtttctctttatcaagctgagtagataaaatcccgaaagcctcatgagatatgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttactgtttctctttatcaagctgagtagataaaatcccgaaagcctcatgagatatgac 500
Query: 301 aactttgagttcacttattagaccttacgtttagagaacagaaatctaggaaactaaagt 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctttgagttcacttattagaccttacgtttagagaacagaaatctaggaaactaaagt 560
Query: 361 gctctctcagaatgcaaaagtgtataggggtataatgacacttgctccgtgaatttcatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctctctcagaatgcaaaagtgtataggggtataatgacacttgctccgtgaatttcatc 620
Query: 421 tctagttgacaccatgaaagtgcagtatctttgcatattatatttgcattgaaaatacct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctagttgacaccatgaaagtgcagtatctttgcatattatatttgcattgaaaatacct 680
Query: 481 cagttaaataactgatgggtaatagcaaaacaagtggaacctgaagatataattattcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagttaaataactgatgggtaatagcaaaacaagtggaacctgaagatataattattcct 740
Query: 541 tacatctaatcaaatatatttcattaaaggccaaacccaatagtagctgataacagttaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tacatctaatcaaatatatttcattaaaggccaaacccaatagtagctgataacagttaa 800
Query: 601 tg 602
||
Sbjct: 801 tg 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
