Query= MSMg01no506_f01.b1 MSMg01no506_f01.b1 CHROMAT_FILE:
MSMg01no506_f01.b1 PHD_FILE: MSMg01no506_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:28 2005
(629 letters)
>mm_chr4_15093968_15094998
Length = 1031
Score = 1176 bits (608), Expect = 0.0
Identities = 621/626 (99%), Gaps = 2/626 (0%)
Strand = Plus / Minus
Query: 6 aattaatcttttctatacccttt--agagagagataactgtttcctttctgcagagagcc 63
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 831 aattaatcttccctataccctttagagagagagataactgtttcctttctgcagagagcc 772
Query: 64 tctgtcaagggattgaaaatgctttatgaatattatatatggtgataagcaggctccagg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tctgtcaagggattgaaaatgctttatgaatattatatatggtgataagcaggctccagg 712
Query: 124 catttcagatacacagagctgacattgaggatattagaactcattcatgcattgtgcaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 catttcagatacacagagctgacattgaggatattagaactcattcatgcattgtgcaaa 652
Query: 184 tgtttatttcatgtcattactggaaatctataatcatggaactgatgccctgggagaaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tgtttatttcatgtcattactggaaatctataatcatggaactgatgccctgggagaaga 592
Query: 244 ggctgcctctgcctgcactgcacagcactggagtgtatgtgggatgttcttaagagagag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ggctgcctctgcctgcactgcacagcactggagtgtatgtgggatgttcttaagagagag 532
Query: 304 cactaatccttcttgacatcctttacccaaatatacaatttatcttataagggctgctcc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cactaatccttcttgacatcctttacccaaatatacaatttatcttataagggctgctcc 472
Query: 364 tccacattcaaggagacatttggatgccctgaaattgttatgtagcccccagtgtttgca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tccacattcaaggagacatttggatgccctgaaattgttatgtagcccccagtgtttgca 412
Query: 424 gtcctctattgttcaaggtaggaatacttataactgcaacggctccccattcatctttaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gtcctctattgttcaaggtaggaatacttataactgcaacggctccccattcatctttaa 352
Query: 484 ttttgttccagttccagcaagctaaaaagaacgaagcatctcatccggattctgagagat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttttgttccagttccagcaagctaaaaagaacgaagcatctcatccggattctgagagat 292
Query: 544 tttctgttactaaagtactaattttgaagccttgatgacaaacaggctggtgccttgtct 603
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 291 tttctgttactaaagtactaattttgaagccttgatgacaaacaggatggtgccttgtct 232
Query: 604 ttgttggcatttcctaggcacagagt 629
||||||||||||||||||||||||||
Sbjct: 231 ttgttggcatttcctaggcacagagt 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1031
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1021
Effective search space: 631999
Effective search space used: 631999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_f01.g1 MSMg01no506_f01.g1 CHROMAT_FILE:
MSMg01no506_f01.g1 PHD_FILE: MSMg01no506_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:28 2005
(159 letters)
>mm_chr4_15050744_15051302
Length = 559
Score = 296 bits (153), Expect = 5e-85
Identities = 156/157 (99%)
Strand = Plus / Plus
Query: 1 ttcatataagacctagcacacagttttaagtaatgggaaagctttgtaaacaaagactat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatataagacctagcacacagttttaagtaatgggaaagctttgtaaacaaagactat 260
Query: 61 tcaggtcctttttaattcttattttctatttttcctcaaaaagcacttactatgtaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaggtcctttttaattcttattttctatttttcctcaaaaagcacttactatgtaaaga 320
Query: 121 caaaaaggtggtggtgggggtaggttggagggggatg 157
|||||||||||||||||| ||||||||||||||||||
Sbjct: 321 caaaaaggtggtggtgggagtaggttggagggggatg 357
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space: 83201
Effective search space used: 83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
