Query= MSMg01no506_f10.b1 MSMg01no506_f10.b1 CHROMAT_FILE:
MSMg01no506_f10.b1 PHD_FILE: MSMg01no506_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:30 2005
(581 letters)
>mm_chr4_135376601_135377583
Length = 983
Score = 982 bits (508), Expect = 0.0
Identities = 559/580 (96%), Gaps = 9/580 (1%)
Strand = Plus / Plus
Query: 4 ggaattctctgatttgctttttgtctatggtcaacattttttt--cctagtaaatttaag 61
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaattctctgatttgctttttgtctatggtcaacatttttttttcctagtaaatttaag 263
Query: 62 gaacccccaggaggaaagataccctcagctagcatcatattacttacatctagtgattat 121
|||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 264 aaacccctaggaggaaagaaaccctcagctagtgtcatattacttacatctagtgattat 323
Query: 122 tttagggcagtggtggtcaacctttctaatgctgtgaccttttaactacagttcctcatg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttagggcagtggtggtcaacctttctaatgctgtgaccttttaactacagttcctcatg 383
Query: 182 cgatgaccccccaccaccaccataaaattatttcgttgctacttcataactgtacttttg 241
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caatgacccccc-----caccataaaattatttcgttgctacttcataactgtacttttg 438
Query: 242 ctgcggttatgaactgtaatgtaaatctctgatatgcagaatatctgatcagcaacccca 301
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctgctcttatgaactgtaatgtaaatctctgatatgcagaatatctgatcagcaacccca 498
Query: 302 aaggggtctggacccacaggttgagaacggctgctttaggctattgaattcaggcactgg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaggggtctggacccacaggttgagaacggctgctttaggctattgaattcaggcactgg 558
Query: 362 agtgcagacttcctctctcttgtgatttatatagcctgttattttccaattgccctaact 421
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agtgcagacttcctctct--tgtgatttatatagcctgttattttccaattgccctaact 616
Query: 422 ataattaacagatgttgtatcggaaatacctccctggccagtgagacggctcagaaggta 481
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ataattagcagatgttgtatcggaaatacctccctggccagtgagacggctcagaaggta 676
Query: 482 aaggggatcgctaagctctccttacagtgactggagacagtcttccagctgacgcgtgat 541
||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 677 aagaggatcgctaagctctccctacagtgactggagacagtcttccagctgatgcgtgat 736
Query: 542 gtgtctgtcccctgacgtccgtcatagctgggtcatagtt 581
||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gtgtctgtcccctgacgtccgtcatagctgggtcatagtt 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 983
Length adjustment: 10
Effective length of query: 571
Effective length of database: 973
Effective search space: 555583
Effective search space used: 555583
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_f10.g1 MSMg01no506_f10.g1 CHROMAT_FILE:
MSMg01no506_f10.g1 PHD_FILE: MSMg01no506_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:30 2005
(244 letters)
>mm_chr4_135513667_135514310
Length = 644
Score = 441 bits (228), Expect = e-128
Identities = 240/244 (98%)
Strand = Plus / Minus
Query: 1 cagaaagagatgagctgtgaagggagcagtgggggatggggagttgtggggagaggcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagaaagagatgagctgtgaagggagcagtgggggatggggagttgtggggagaggcaga 385
Query: 61 ggcggctagcatggcaagggttagtgaggcagacctccctgagggcatggggacttcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggcggctagcatggcaagggttagtgaggcagacctccctgagggcatggggacttcaga 325
Query: 121 gggaagatcttccaaaggtgtgttccagtcagggtcagggtctggcatgctcgggacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gggaagatcttccaaaggtgtgttccagtcagggtcagggtctggcatgctcgggacaga 265
Query: 181 tcttaggacagactaaggcctggggacagtcggggcaaggaactatgacatgaggcagga 240
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 gcaaaggacagactaaggcctggggacagtcggggcaaggaagtatgacatgaggcagga 205
Query: 241 gggg 244
||||
Sbjct: 204 gggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
