BAC Information

Click to search

BAC

Clone NameMSMg01-506I04
Chromosome4 (Build37)
Map Location 136,405,984 - 136,464,046
singlet/doubletdoublet
Overlap geneC1qb, C1qc, C1qa
Upstream geneFusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2
Downstream geneEpha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506I04.T7 (MSMg01no506_i04.b1)MSMg01-506I04.TJ (MSMg01no506_i04.g1)
ACCAG580888AG580889
length744744
length of high quality
(start - end)
475 (76 - 550)534 (78 - 611)
definitionCHROMAT_FILE: MSMg01no506_i04.b1 PHD_FILE: MSMg01no506_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:45 2005CHROMAT_FILE: MSMg01no506_i04.g1 PHD_FILE: MSMg01no506_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,405,984 - 136,406,458)(136,463,528 - 136,464,046)
sequence
GCACACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GCGCGGAATTCCACTCAGGTTTCCTGGAGTTAAGGACCTGCTTCCAACTG
GTGGCACAGAGCTGGCAAGACATCCTGTGGTCAGGAACAGCCAGAGGTTC
CACACTCCTCCTGTCCTTAGGAGAAGTTCTGCCACGTCTCAGGACCCCTG
GAGACAAAGAGTAGTCAAGTCAGTGGGCCACCTGGGGTGTGGACCCTCTA
GTGCCCACAAACTTTTTGATGGCTGCTATCCCTGTTGACATTCTGATTTT
AATCTGGGAGAGACCCAGAGCCACCTCTGATTTCCTGACCTACAAGAACC
AGGAAGTGATGAACAGTCGTTCATCATTTAATCTACTGTGTTTCAGGGGA
AAAGTCACCATAGTCTCACTTGGTAGCCACGCAGAGCTAGGGTTGCTTTT
TATTTACTTTTGAGACAGGGTCTTGTGTATTCCAGACTGTCCCCAACTTG
TGTGTAGCAGAGGATGACCCTAAACTCTGGGTCCCCCTGCCTCTGCTTCC
CCAGTGCTGAGATGACAGGTCTAATCACATATATATTAAGAATCTCCCCC
CCTCCTTTTCCTTTTTCCTCTGGCCCTGCTCGCTCTGGCTCATAGGCTTT
TATTTGTTTTTCATTAATGATGGTTGTGAGTCTTCATGTTATTGCTGATA
TTTTAATTTTTGACCCCGGAAGAAGATGCAGCGCTTTTAACCAT
TTTCGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGTGATCCTCATGCCTGGCT
GTGAACCTTTTAATACCACTGAGCTCTGTATCTAAAATGATTCAGTGATC
ATTCTTAGCTGCTGAGTCATCTCTCAAGCCCACACTTTGTTTTTCAGACA
AAGTCTCCCACTGGGATCTGGGACTCACTTAGTTGACTCTGCTGGCTGGT
CAGTGAGCCTGAGAGGGAGGGCCACCTATCTGTGTCCTCTAGCATGGGGA
TTAAGCACACACTACTGTGCCAGGTTTTTTTCCATGTGTGCTGAGAATTG
AGCTCATACTTGCTACCTCCCCAGGATCTACCCTCTATCTAGCTGTTTTT
GAGGCAGGGTCTTACTCTGTTGCCCAGGCTAGCCTGGAATTCACTTTATA
ACCCAGACTAACCTCAGTCTCAATGTCATAGCAGTCCACCTGTCTCAGCC
TCTTGGGAGTGTAAGTGTGAGCCAGCACACCTGGCCTCTCGGCACACATT
AGCCCATCGGGTCTTCACAGTGATGCTATGAGGAAGTGCTGTTATTATTC
TATTTTGCAGATGAGAAGACCGTGGCTTTATGAGATAATATGCCGGTGTC
ATGGTTACATATAGGGAAGCAAAACACCGAAAACGGGTGTCTGTGGCTAC
CAAGAAGTGTGTCTCTGCGTGCACCTCCACCCTCTTTCCTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_i04.b1 MSMg01no506_i04.b1 CHROMAT_FILE:
MSMg01no506_i04.b1 PHD_FILE: MSMg01no506_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:45 2005
         (475 letters)



>mm_chr4_136405784_136406658
          Length = 875

 Score =  911 bits (471), Expect = 0.0
 Identities = 474/475 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagttaaggacctgcttccaactggtggcacagagctggcaagacatcctgtggtcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagttaaggacctgcttccaactggtggcacagagctggcaagacatcctgtggtcagg 260

                                                                       
Query: 61  aacagccagaggttccacactcctcctgtccttaggagaagttctgccacgtctcaggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacagccagaggttccacactcctcctgtccttaggagaagttctgccacgtctcaggac 320

                                                                       
Query: 121 ccctggagacaaagagtagtcaagtcagtgggccacctggggtgtggaccctctagtgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctggagacaaagagtagtcaagtcagtgggccacctggggtgtggaccctctagtgcc 380

                                                                       
Query: 181 cacaaactttttgatggctgctatccctgttgacattctgattttaatctgggagagacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaaactttttgatggctgctatccctgttgacattctgattttaatctgggagagacc 440

                                                                       
Query: 241 cagagccacctctgatttcctgacctacaagaaccaggaagtgatgaacagtcgttcatc 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagagccacctctgagttcctgacctacaagaaccaggaagtgatgaacagtcgttcatc 500

                                                                       
Query: 301 atttaatctactgtgtttcaggggaaaagtcaccatagtctcacttggtagccacgcaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttaatctactgtgtttcaggggaaaagtcaccatagtctcacttggtagccacgcaga 560

                                                                       
Query: 361 gctagggttgctttttatttacttttgagacagggtcttgtgtattccagactgtcccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctagggttgctttttatttacttttgagacagggtcttgtgtattccagactgtcccca 620

                                                                  
Query: 421 acttgtgtgtagcagaggatgaccctaaactctgggtccccctgcctctgcttcc 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttgtgtgtagcagaggatgaccctaaactctgggtccccctgcctctgcttcc 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no506_i04.g1 MSMg01no506_i04.g1 CHROMAT_FILE:
MSMg01no506_i04.g1 PHD_FILE: MSMg01no506_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:45 2005
         (534 letters)



>mm_chr4_136463528_136464461
          Length = 934

 Score =  996 bits (515), Expect = 0.0
 Identities = 518/519 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggtgatcctcatgcctggctgtgaaccttttaataccactgagctctgtatctaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cagggtgatcctcatgcctggctgtgaaccttttaataccactgagctctgtatctaaaa 460

                                                                       
Query: 61  tgattcagtgatcattcttagctgctgagtcatctctcaagcccacactttgtttttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgattcagtgatcattcttagctgctgagtcatctctcaagcccacactttgtttttcag 400

                                                                       
Query: 121 acaaagtctcccactgggatctgggactcacttagttgactctgctggctggtcagtgag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 399 acaaagtctcccactgggatctgggactcacttagttgactctgctggctggccagtgag 340

                                                                       
Query: 181 cctgagagggagggccacctatctgtgtcctctagcatggggattaagcacacactactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cctgagagggagggccacctatctgtgtcctctagcatggggattaagcacacactactg 280

                                                                       
Query: 241 tgccaggtttttttccatgtgtgctgagaattgagctcatacttgctacctccccaggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgccaggtttttttccatgtgtgctgagaattgagctcatacttgctacctccccaggat 220

                                                                       
Query: 301 ctaccctctatctagctgtttttgaggcagggtcttactctgttgcccaggctagcctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ctaccctctatctagctgtttttgaggcagggtcttactctgttgcccaggctagcctgg 160

                                                                       
Query: 361 aattcactttataacccagactaacctcagtctcaatgtcatagcagtccacctgtctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aattcactttataacccagactaacctcagtctcaatgtcatagcagtccacctgtctca 100

                                                                       
Query: 421 gcctcttgggagtgtaagtgtgagccagcacacctggcctctcggcacacattagcccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  gcctcttgggagtgtaagtgtgagccagcacacctggcctctcggcacacattagcccat 40

                                                  
Query: 481 cgggtcttcacagtgatgctatgaggaagtgctgttatt 519
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  cgggtcttcacagtgatgctatgaggaagtgctgttatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)