AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTATCCCTGACCTCAAGATATATTACAGAGCAATAGTGAAAAA
AAAAAAAAACCCAACAACTGCATGGTACTGGTACAGAGACAGACACATTG
ATCAATGGAATAGAATTGGAAGAGCCAGAAATAAAACCACACACTTACGG
ACACATGATCTTTGACAAAGAAGCCAAAAATATACAATGGAAAAAAGAAA
GTATCTTCAATAAATTGTGCTGGTCTAACTGGCTGTCTGTATGTAAAAAA
ATGAAAATAGATCTGTATTTGTCATCTTGCACAAAACTCAAGTCCAAGTG
GATCAAAAACCTCATCATAAAACCAGATACATTGAATCTAATAGAAGAGA
AAGTAGGAACTAGCCTTGAACTCAATGGCACAAGGGGGAATTATCTAAAC
AGAACTCCAATAGCTCATACTCTAAAATCAAGAATTGATAAATGGGACCT
CATGAAACTGGAAAGCTTCTGGAAGGCAAAGGACATAGTTGATAAGGCAA
CCTACAGATTGGGGAAAAATCTCCATTACCCCAACATCTGATAGAGGATT
AATATCCATATATAAAGAACTCAAGAAGCTAACCACCAAAACCAAAACAA
AACAAAATAAAAAACAAAACCAACCAAACAAAGAAAACCCCAACCCAATC
GAAAAATGGGGTAAAGAACTAAAATGGAACTGAGGAATCTTGAATGGCTG
AGAAGCA

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCCAGCTCTGTTACCAGGCTGGCCTT
GAACTTACAAAGATCCATCTTCCTCTGCCTCCTAACTGCTGGGATTAAAG
ATGTGAGCAATGAGCTTATATATGTTTTTAAAACTGTATTTATGTATGCA
TTATCTGTGTGATAGACAGCAATTACAGATCATCAAACAACCATTGAGTT
CTTATAGGCACCAAAAGAATAAGAGAGAGCAAGACAGAAAAAGTTGTGAG
AAGCAACTGACAGCTCTGAGGCTTATTGATCACAGAGAAGCAAAACAAAC
AATTCTACAAATGTTAATTAATGAACCAAATGAGAACATAAAGTACTCAC
AAGCTGAGACACTTAAATGAGTTTGATATCTTTTATGGACCACAAAATTA
ACAATGAAAATATAAAGCATGCAGAGAGTCGTGAACTGGTTAACCCTTGG
TTAGAGATGACCTCCACCCCGTTCTTAAGACCTACCAGAGTTCGCCGCCC
AGATTACAGCTATGATCCTGGATCCTAGTAGATTCGGAAGTTTGAATATT
CAGCTCAGGGATTATATCTTCCCTAAGACTCCTAAAGCTTAACTTTAGCT
TGGCTTGGCTTGGCTTGGCTTTAACGTTTAGTCATTTGTTTTCTTGCAAC
TTTAGCACACTGCAAAACAAAATTGAAATGTCAATAAAAAAAATATTGCC
AAATACATAGGAACATTAN

Query= MSMg01no506_k18.g1 MSMg01no506_k18.g1 CHROMAT_FILE:
MSMg01no506_k18.g1 PHD_FILE: MSMg01no506_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:57 2005
         (693 letters)



>mm_chr4_13433160_13434249
          Length = 1090

 Score = 1208 bits (625), Expect = 0.0
 Identities = 675/695 (97%), Gaps = 7/695 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actccagctctgttaccaggctggccttgaacttacaaagatccatcttcctctgcctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actccagctctgttaccaggctggccttgaacttacaaagatccatcttcctctgcctcc 260

                                                                       
Query: 61  taactgctgggattaaagatgtgagcaatgagcttatatatgtttttaaaactgtattta 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taactgctgggattaaaaatgtgagcaatgagcttatatatgtttttaaaactgtattta 320

                                                                       
Query: 121 tgtatgcattatctgtgtgatagacagcaattacagatcatcaaacaaccattgagttct 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct: 321 tgtatgcattatctgtgtgatagacagcaattgcagatcatcaaacaaccactaagttct 380

                                                                       
Query: 181 tataggcaccaaaagaataagagagagcaagacagaaaaagttgtgagaagcaactgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataggcaccaaaagaataagagagagcaagacagaaaaagttgtgagaagcaactgaca 440

                                                                       
Query: 241 gctctgaggcttattgatcacagagaagcaaaacaaacaattctacaaatgttaattaat 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctctgaggcagattgatcacagagaagcaaaacaaacaattctacaaatgttaattaat 500

                                                                       
Query: 301 gaaccaaatgagaacataaagtactcacaagctgagacacttaaatgagtttgatatctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaccaaatgagaacataaagtactcacaagctgagacacttaaatgagtttgatatctt 560

                                                                       
Query: 361 ttatggaccacaaaattaacaatgaaaatataaagcatgcagagagtcgtgaac--tggt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  
Sbjct: 561 ttatggaccacaaaattaacaatgaaaatataaagcatgcagagagtcgtgaacagtg-- 618

                                                                       
Query: 419 taacccttggttagagatgacctccaccccgttcttaagacctaccagagttcgccgccc 478
              |||||||||||||||||||||||||| ||||||||| ||||||||||||| || |||
Sbjct: 619 ---cccttggttagagatgacctccaccctgttcttaaggcctaccagagttccccaccc 675

                                                                       
Query: 479 agattacagctatgatcctggatcctagtagattcggaagtttgaatattcagctcaggg 538
           | || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 atatcacaactatgatcctggatcctagtagattcggaagtttgaatattcagctcaggg 735

                                                                       
Query: 539 attatatcttccctaagactcctaaagcttaactttagcttggcttggcttggcttggct 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 attatatcttccctaagactcctaaagcttaactttagcttggcttggcttggcttggct 795

                                                                       
Query: 599 ttaacgtttagtcatttgttttcttgcaactttagcacactgcaaaacaaaattgaaatg 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ttaacgtttagtcatttgttttcttgcaactttagcacactgcaaaacaaaattgaaatg 855

                                              
Query: 659 tcaataaaaaaaatattgccaaatacataggaaca 693
           |||||||||||||||||||||||||||||||||||
Sbjct: 856 tcaataaaaaaaatattgccaaatacataggaaca 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1090
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1080
Effective search space:   737640
Effective search space used:   737640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)