BAC Information

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BAC

Clone NameMSMg01-506M16
Chromosome4 (Build37)
Map Location 129,234,780 - 129,422,879
singlet/doubletdoublet
Overlap geneLck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1
Upstream geneZscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1
Downstream geneLOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506M16.T7 (MSMg01no506_m16.b1)MSMg01-506M16.TJ (MSMg01no506_m16.g1)
ACCAG581099AG581100
length752756
length of high quality
(start - end)		636 (75 - 710)371 (326 - 696)
definitionCHROMAT_FILE: MSMg01no506_m16.b1 PHD_FILE: MSMg01no506_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:06 2005CHROMAT_FILE: MSMg01no506_m16.g1 PHD_FILE: MSMg01no506_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,234,780 - 129,235,415)(129,422,509 - 129,422,879)
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGAGATTACGATGCAGACAAGGTGGAGAGAAGATGAAGACAGTA
TGGACACGAACAACCAAGCATCCCCAGGCCGTATCATGTTTCACAGGCTG
CTGGATGAAGTCACCTTGCAGCGGGGATGCTGGTGGGAGAGATCCCTCAT
AGGTGACCAGTGGGTCCCGCACTTCAGAGCCATTCCGGATGGGCAGCTGC
GGGGTAGGAAATGAGGCTGGGGTCAAAGAAAAAAGACAGGATTTGACCCT
AGCTCCCTCTCCTCTCCTCTTCTTTCCGTTTCTCCAGCCTGGTTGAACCT
TGTCTCTGAATTCACCAACTATGTGTACATTTGACCTTAGGAAGGTCCCT
TCCTCTAGCTGGGCCTCTTCCGTGATGTATGCTAGGGAAGATAGGAGTGC
TGCTATTTTCCAGAGCCTTTAGTTATGGTCCATTTAGGTTTTTTCTCCTG
GATACACAACCTTTCAACCCCATGCCATCCCTTCACCAATCTTATGTCCT
CCGCCCCCATCCCTCCACCAATCCTATCTCCTGGCCCCCATCCCTTCACT
AATCCCATCTTCCTCTTACCGAGATCTTGCTGTCCAGTGGGACTATGGGA
TAGTGGCAGTTTTCACACACGTCAATGTTCTCCATCCAGTCATCTTCAGG
GTTTGAGCTGCAGACACAGCCCATGATCCCTGAAGGAATGTAGAGAGGTC
TG

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTACGCAAAAGTCTTTCTTTTTCTTTTTAAGATTTATTTT
ATTTATATGAGTACACTGTAGCTGGGAATTGAACTCAGGACTCTGCTCGC
TCCAGCCTAAAAATTTATGATTATGTGTAAGTACACTGTAGCTGTCTTTA
GACACACCAGGAGAGGGTGTCAGATCTCATTACCAATGTTTGTGAGCCAC
CATGTAGTTACTGGGATTTGAACTCAGGACTTTCGGAAGAGCAGTCGGTG
CTCTTAACTGCTGAGCCTTGTTTTCAGCCCCACTAGTGAATTCTTTTTTG
TTTGTTTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCTCTGGCT
GTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTG
CCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCATGCC
CGGCTCACTAGTGAGTTCTTATTGAAAGCCCTGTCTTTGGGCAGATAAGG
GAAATTCAGAAAACTTTAACCTGATTGCCTATTGGTAATGAATACATCAA
GGCGAGATATTGGGGGATGGCCTTTTTGCAATTCTTTCTTTGGCTAGCTT
TGATAAGTGATTCAAGCACAAATGCTAGACACAAGTAGTTAGGTGACTAG
AATAGAGATACAAATTTACAAATTAACATTTTAGACATCTTTTTCATGTG
GCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_m16.b1 MSMg01no506_m16.b1 CHROMAT_FILE:
MSMg01no506_m16.b1 PHD_FILE: MSMg01no506_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:06 2005
         (636 letters)



>mm_chr4_129234580_129235615
          Length = 1036

 Score = 1230 bits (636), Expect = 0.0
 Identities = 636/636 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggtggagagaagatgaagacagtatggacacgaacaaccaagcatccccaggccgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggtggagagaagatgaagacagtatggacacgaacaaccaagcatccccaggccgtat 260

                                                                       
Query: 61  catgtttcacaggctgctggatgaagtcaccttgcagcggggatgctggtgggagagatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtttcacaggctgctggatgaagtcaccttgcagcggggatgctggtgggagagatc 320

                                                                       
Query: 121 cctcataggtgaccagtgggtcccgcacttcagagccattccggatgggcagctgcgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcataggtgaccagtgggtcccgcacttcagagccattccggatgggcagctgcgggg 380

                                                                       
Query: 181 taggaaatgaggctggggtcaaagaaaaaagacaggatttgaccctagctccctctcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggaaatgaggctggggtcaaagaaaaaagacaggatttgaccctagctccctctcctc 440

                                                                       
Query: 241 tcctcttctttccgtttctccagcctggttgaaccttgtctctgaattcaccaactatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctcttctttccgtttctccagcctggttgaaccttgtctctgaattcaccaactatgt 500

                                                                       
Query: 301 gtacatttgaccttaggaaggtcccttcctctagctgggcctcttccgtgatgtatgcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtacatttgaccttaggaaggtcccttcctctagctgggcctcttccgtgatgtatgcta 560

                                                                       
Query: 361 gggaagataggagtgctgctattttccagagcctttagttatggtccatttaggtttttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggaagataggagtgctgctattttccagagcctttagttatggtccatttaggtttttt 620

                                                                       
Query: 421 ctcctggatacacaacctttcaaccccatgccatcccttcaccaatcttatgtcctccgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcctggatacacaacctttcaaccccatgccatcccttcaccaatcttatgtcctccgc 680

                                                                       
Query: 481 ccccatccctccaccaatcctatctcctggcccccatcccttcactaatcccatcttcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccccatccctccaccaatcctatctcctggcccccatcccttcactaatcccatcttcct 740

                                                                       
Query: 541 cttaccgagatcttgctgtccagtgggactatgggatagtggcagttttcacacacgtca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttaccgagatcttgctgtccagtgggactatgggatagtggcagttttcacacacgtca 800

                                               
Query: 601 atgttctccatccagtcatcttcagggtttgagctg 636
           ||||||||||||||||||||||||||||||||||||
Sbjct: 801 atgttctccatccagtcatcttcagggtttgagctg 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no506_m16.g1 MSMg01no506_m16.g1 CHROMAT_FILE:
MSMg01no506_m16.g1 PHD_FILE: MSMg01no506_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:06 2005
         (371 letters)



>mm_chr4_129422129_129422899
          Length = 771

 Score =  717 bits (371), Expect = 0.0
 Identities = 371/371 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccccactagtgaattcttttttgtttgtttgtttttgtttttcgagacagggtttctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 agccccactagtgaattcttttttgtttgtttgtttttgtttttcgagacagggtttctc 692

                                                                       
Query: 61  tgtgtagctctggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tgtgtagctctggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaa 632

                                                                       
Query: 121 atctgcctgcctctgcctcccaagtgctgggattaaaggcgtgtgccaccatgcccggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 atctgcctgcctctgcctcccaagtgctgggattaaaggcgtgtgccaccatgcccggct 572

                                                                       
Query: 181 cactagtgagttcttattgaaagccctgtctttgggcagataagggaaattcagaaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cactagtgagttcttattgaaagccctgtctttgggcagataagggaaattcagaaaact 512

                                                                       
Query: 241 ttaacctgattgcctattggtaatgaatacatcaaggcgagatattgggggatggccttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttaacctgattgcctattggtaatgaatacatcaaggcgagatattgggggatggccttt 452

                                                                       
Query: 301 ttgcaattctttctttggctagctttgataagtgattcaagcacaaatgctagacacaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttgcaattctttctttggctagctttgataagtgattcaagcacaaatgctagacacaag 392

                      
Query: 361 tagttaggtga 371
           |||||||||||
Sbjct: 391 tagttaggtga 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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