CCCCCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAGGATTTCCAGGGCTATACAGAGAAACCCTGTCTTG
AAAAACCAAAAAAAAAAAAAAATTCATTGCTTCATCTTCACTGTAATTTT
GCTGTTTTTATGAATCATGATGTAAATATCTGTGATTTCCAATGGTCTTA
GAGACTCCTATGAAAGTGTGGGTTGACCTGACCGCTAGGTTGAAAACAAC
TACTGTGCAGCAGAAACATCTCTAAGACTATACAAGCTTCTCAGAGGAAT
GAAATCTGTCATGCTTCTATATGGATCTCTGAGATTGTCACTATCCTTGT
AACACAGATAAGCACTGTCCCTTGCTTGTGGACAAGCACTTATGGAGGTA
TCAAACAGCAAAAGTAAATAAAGTTTGATTTTTGAAAAAAGTAGCCCATT
TATGGAGAAATAATAAAACTCAGAACTCTTGAATAATTCAATAACATTTT
AGTAAGGAAAATTCAAATAATGGAAATACACATATGTTCTTTTAATGAGC
TTTTAAAGAATATATTTATGTATTCACTTTATTTTTTAAAACACACCTTT
ATTTATTTATTTATTATTTATTTATTTATTTATTTTACACTCCAGATTTT
ATTTCCCTTCCTGTCCACCCTTTGTCTATTTCACATCCCATACCTCCTCC
CTGCCCATGTTCTCCACGAGGACGTCCCTACCATCCACTCCN

NGGTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGACCAACACATCAAAGAGA
GAATTCTCATTTATAGTACTGGGACATCTGTTAGATAGAACTATGGGTTT
TTACCTTTTTATTATTAATTACAGCTTTTAATTACTTTTGTTTTCTTTTA
TTATGTAATTTTAGTTATTTTATTGTAATACATAATTCTAAAACATTTAT
TTTACTATTTTTTTAATTTAATCATGGGTTTTATATTATTATCACTAGTG
GCATAATTTTACATATATATGCTTAAATATCTTTATAGTATAAAATATAT
AATATATAATAAATACTATATAAATATAGCTAAAACTATAAAGAGAAAAT
ATATTTTTATATATCCTTCTCTCTCTCTTTTTGCCTCCCTCCATATTGCC
CCTTACTCCCAGTCCCCTGTTAAAGTCACTTCTGCTTTCTCCTTTACCAC
TTCATAGCACCCGCATCCTGCTACTAATTTATCTAGAATTCTATCTTCCT
GTGGCCATATTTTCCTGCTTTCTGCTATTCATCCAGACTATATACTCCCA
TATGAAGTTTTGGTTCTAAGAACTACAAATTAAGGAGAGCATGTTTTGTT
TGTCTTTCTGAGTTTGGGTTACCATATGTAATATAATATTTTCTCATTTT
TTTTCTATTTACTTACAAAGNTCATGGTTTTTGGTTTTCTTACAACTGAT
TAATATGCCN

Query= MSMg01no506_n10.b1 MSMg01no506_n10.b1 CHROMAT_FILE:
MSMg01no506_n10.b1 PHD_FILE: MSMg01no506_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:10 2005
         (638 letters)



>mm_chr4_29563211_29564250
          Length = 1040

 Score =  934 bits (483), Expect = 0.0
 Identities = 580/621 (93%), Gaps = 19/621 (3%)
 Strand = Plus / Minus

                                                                       
Query: 24  aaaaaccaaaaaaaaaaaaaaattcattgcttcatcttcactgtaattttgctgttttta 83
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 aaaaa--aaaaaaaaaaaaaaattcattgcttcatcttcactgtaattttgctgttttta 809

                                                                       
Query: 84  tgaatcatgatgtaaatatctgtgatttccaatggtcttagagactcctatgaaagtgtg 143
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tgaatcatgatataaatatctgtgatttccaatggtcttagagactcctatgaaagtgtg 749

                                                                       
Query: 144 ggttgacctgaccgctaggttgaaaacaactactgtgcagcagaaacatctctaagacta 203
           | ||| ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 748 gattggcctgacctctaggttgagaacaactactctgcagcagaaacatctctaagacta 689

                                                                       
Query: 204 tacaagcttctcagaggaatgaaatctgtcatgcttctatatggatctctgagattgtca 263
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 688 tacaagcttctcagaggaatgaaatctgtcatgcttctatacggatctctgagattgtca 629

                                                                       
Query: 264 ctatccttgtaacacagataagcactgtcccttgcttgtggacaagcacttatggaggta 323
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctatccttgtaatatagataagcactgtcccttgcttgtggacaagcacttatggaggta 569

                                                                       
Query: 324 tcaaacagcaaaagtaaataaagtttga------tttttgaaaaaagtagcccatttatg 377
           ||||||||||||||||||||||||||||      |||||  |||||||||||||||| ||
Sbjct: 568 tcaaacagcaaaagtaaataaagtttgattttttttttt--aaaaagtagcccatttgtg 511

                                                                       
Query: 378 gagaaataataaaactcagaactcttgaataattcaataacattttagtaaggaaaattc 437
           |||||||||| ||||||  ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 510 gagaaataatgaaactc--aactcttgaataattcaataatattttagtaaggaaaattc 453

                                                                       
Query: 438 aaataatggaaatacacatatgttcttttaatgagcttttaaagaatatatttatgtatt 497
           |||||||||||||||||||||||||||||||||| |||||||| |||||| |||| ||||
Sbjct: 452 aaataatggaaatacacatatgttcttttaatgatcttttaaataatatacttatttatt 393

                                                                       
Query: 498 cactttattttttaaaacacacctttatttatttatttattatttatttatttatttatt 557
           ||||||||||||||||||||||    ||||||||||   |||||||||||||||||||||
Sbjct: 392 cactttattttttaaaacacac----atttatttat---ttatttatttatttatttatt 340

                                                                       
Query: 558 ttacactccagattttatttcccttcctgtccaccctttgtctatttcacatcccatacc 617
           | |||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||||
Sbjct: 339 taacactccagattttatttccctcccagtccaccctctgtctatttcacatcacatacc 280

                                
Query: 618 tcctccctgcccatgttctcc 638
           ||||||||||||| |||||||
Sbjct: 279 tcctccctgcccacgttctcc 259


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1040
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1030
Effective search space:   646840
Effective search space used:   646840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)