Query= MSMg01no507_b22.b1 MSMg01no507_b22.b1 CHROMAT_FILE:
MSMg01no507_b22.b1 PHD_FILE: MSMg01no507_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:32 2005
(281 letters)
>mm_chr4_101906578_101907258
Length = 681
Score = 458 bits (237), Expect = e-133
Identities = 270/283 (95%), Gaps = 7/283 (2%)
Strand = Plus / Plus
Query: 5 gaattcactagtgtgtcatagagggaaatggtacgaatgtaccaactagcatgagtgatt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactagtgtgacatagagggaaatggtacgaatgtaccaactagcatgagtgatt 264
Query: 65 taaacacaaagtgattaaatatgcta-tttttaaagtgttcactgggagctgtttatata 123
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 265 taaacacaaagtgattaaatatgctattttttaaagtgttcactgggtgctgtttatata 324
Query: 124 agggatgcacaatacacaggttttcacacttgtatgcatttaatccctcatattagctgg 183
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 agggatgcacaatacacaggttttcacacttgtatgcatttaatcactcatattagctgg 384
Query: 184 tataggctgtttatataaggggaatagaagaatggctnggagagtctacacctgacagaa 243
||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 385 tataggctgtttataaaagggggatagaagaatggct-ggagagtctacacctgacagaa 443
Query: 244 tagatcttgggtttgttggtaagatca---tt--gttgagaga 281
|||||||||||| |||||||||||||| || |||||||||
Sbjct: 444 tagatcttgggtctgttggtaagatcactgttaagttgagaga 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no507_b22.g1 MSMg01no507_b22.g1 CHROMAT_FILE:
MSMg01no507_b22.g1 PHD_FILE: MSMg01no507_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:32 2005
(490 letters)
>mm_chr4_102070555_102071444
Length = 890
Score = 917 bits (474), Expect = 0.0
Identities = 486/490 (99%)
Strand = Plus / Minus
Query: 1 ttggcaaaggactgtagcttttctaattttggagtgctttgagtgagcaaagcaatctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ttggcaaaggactgtagcttttctaattttggagtgctttgagtgagcaaagcaatctgt 631
Query: 61 gagcaagctggggacttgttgatggtttccttgctaccttttgtcctgtttcttgagctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagcaagctggggacttgttgatggtttccttgctaccttttgtcctgtttcttgagctt 571
Query: 121 atatcaagctacccctactctctagctgttttcaaaaccccctcaagtgtgcgtgtgtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 570 atatcaagctacccctactctctagctgttttcaaaaccccctcaagtgtgcgggtgtat 511
Query: 181 tgtgcttcagttttaattggagtagtatctgacagagaagaggagcccatatcctaacat 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 510 tgtgcttcagttttaattggagtagtatctgatagagaagaggagcccatatcctaacat 451
Query: 241 gtagcacaatccaagactggccagaagaaggttattctaaaagtggatgctgtagttgcc 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 450 gtagcacaatccaagactggccggaagaaggttattctaaaagtggatgctgtagttgcc 391
Query: 301 cctcaaatcctgatgctcacagttccagaacagacaagctacttggcttggttttcttta 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 390 cctcaaatcctgatgctcacagttccagaacagataagctacttggcttggttttcttta 331
Query: 361 gtgtgggaagatggaccccactctttgctcctaatagatttgggcttatggaaaccacgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtgtgggaagatggaccccactctttgctcctaatagatttgggcttatggaaaccacgg 271
Query: 421 ccctaaatagttataggcatcctttaacaggactaatttctctctcttccactctacctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ccctaaatagttataggcatcctttaacaggactaatttctctctcttccactctacctc 211
Query: 481 taattctcca 490
||||||||||
Sbjct: 210 taattctcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
