Query= MSMg01no507_d14.b1 MSMg01no507_d14.b1 CHROMAT_FILE:
MSMg01no507_d14.b1 PHD_FILE: MSMg01no507_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:41 2005
(679 letters)
>mm_chr4_118187005_118188081
Length = 1077
Score = 1135 bits (587), Expect = 0.0
Identities = 655/681 (96%), Gaps = 11/681 (1%)
Strand = Plus / Plus
Query: 4 gaattcttctgctttcc---taaacctgactgctggctggagaggtaagagagagccggg 60
||||||||||||| || || ||||||||||||||||||||||||||||||| |||
Sbjct: 204 gaattcttctgct--cccactaggcctgactgctggctggagaggtaagagagagaaggg 261
Query: 61 aggggatgctacagttacacgtcacgcttt-gaaggttgactgtgaattatcatttagaa 119
|||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||
Sbjct: 262 aggggatgctacagttacacgtcatgctttaga-ggttgactg---attatcatttagaa 317
Query: 120 tcacagtggaaacaagtctccaagtatatgtatgagagattatctagacctacatgaaca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tcacagtggaaacaagtctccaagtatatgtatgagagattatctagacctacatgaaca 377
Query: 180 tcattccagcagctggcatcctggactgtattcaaacagcatgctctgctttctgactgg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 378 tcattccagcagctggcatcctggactgtattcaaacagcatgctctgctttcggactgg 437
Query: 240 atacaatgtagccaaccacctggagttccctggtttgttggaccagaagcactccctcct 299
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 438 atacaatgtagccaaccacctggagttccctggcaggagggaccagaagcactccctcct 497
Query: 300 tccttaaattgcttttgtcggctgttttgtggcatcaaaacagatctctaatacctcgtg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tccttaaattgcttttgtcggctgttttgtggcatcaaaacagatctctaatacctcgtg 557
Query: 360 tgtcatttagtttttttttttttt-ccaatggtacatgtggccaggtggagccaggaact 418
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct: 558 tgtcatttagtttttttttttttttccaatggtacatgtggccaggtggagcaaggagct 617
Query: 419 ctggatgaaattgtctcaggaacctgggtgatgaatctgatgtggcaactctatgagata 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctggatgaaattgtctcaggaacctgggtgatgaatctgatgtggcaactctatgagata 677
Query: 479 attttactggagtttcagggtggtgtggctggggacttctgaggcttagtaaacgcttcc 538
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 678 attttactggagtttcagggtggtgtagctggggacttctgaggcttagtaaacgcttcc 737
Query: 539 tcagtgcttcctggaacaacatggccctggcctttgagcgagaaagaaagccccaagagc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tcagtgcttcctggaacaacatggccctggcctttgagcgagaaagaaagccccaagagc 797
Query: 599 cttggccttgaaatattgccccgcacttggatgtcttgggggcttccctggggatggggg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cttggccttgaaatattgccccgcacttggatgtcttgggggcttccctggggatggggg 857
Query: 659 agggtcctttcagttgcggaa 679
||||||||||||| |||||||
Sbjct: 858 agggtcctttcagctgcggaa 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1077
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1067
Effective search space: 713823
Effective search space used: 713823
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_d14.g1 MSMg01no507_d14.g1 CHROMAT_FILE:
MSMg01no507_d14.g1 PHD_FILE: MSMg01no507_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:41 2005
(665 letters)
>mm_chr4_118351550_118352614
Length = 1065
Score = 944 bits (488), Expect = 0.0
Identities = 522/536 (97%), Gaps = 6/536 (1%)
Strand = Plus / Minus
Query: 1 ccagttgtgttgtcaggatggtctagaagtgagagtcccctccttcccacacctctgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ccagttgtgttgtcaggatggtctagaagtgagagtcccctccttcccacacctctgtgc 476
Query: 61 ctgttttagccttaagtggcgtcttaaagagcacttagtcaggccactcaaggcacctgg 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 475 ctgttttagccttaagtggcgtcttaaagagcacttagtcaggccacacaaggcacctgg 416
Query: 121 tgtgagctggtctcctgtggctcctgccgccactgcccagctccaacctgaggcataaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgtgagctggtctcctgtggctcctgccgccactgcccagctccaacctgaggcataaac 356
Query: 181 agagagttttggatgttcatacagctctggagagggtcatcatagagctaaagcaaccca 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 agagagtgttggatgttcatacagctctggagagggtcatcatagagctaaagcaaccca 296
Query: 241 gctggcaccagtcttctctaggatgactgtccctggccttctgattgtcccctctcttac 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 295 gctggcaccagtcttctctaggatgactgtccctggccttctgattgtctcctctcttac 236
Query: 301 ccacctttttgggggcacaaattttctgaagacaggctgggtatggtagcacacacaccc 360
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ccaccttttttggggcacaatttttctgaagacaggctgggtatggtagcacacacaccc 176
Query: 361 tttcattccagcagaggcagacagatctctgagttcaaagccagcctggtctacagagtg 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tttcactccagcagaggcagacagatctctgagttcaaagccagcctggtctacagagtg 116
Query: 421 agttccaggacagccagggctacacagagactctgtttcaaaaaaaaaaaaaaaaagtaa 480
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||
Sbjct: 115 agttccaggacagccagggctacacagagactctatttccaaaaaaaaaaaaaaa-gtaa 57
Query: 481 acaaaat-----ttttctgaagatcatttaacagttatcacagcagcacataattc 531
||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 acaaaataaaatttttctgaagatcatttaacagttatcacagcagcacataattc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
