Query= MSMg01no508_c24.b1 MSMg01no508_c24.b1 CHROMAT_FILE:
MSMg01no508_c24.b1 PHD_FILE: MSMg01no508_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:01 2005
(566 letters)
>mm_chr4_129030427_129031392
Length = 966
Score = 534 bits (276), Expect = e-156
Identities = 305/316 (96%), Gaps = 4/316 (1%)
Strand = Plus / Minus
Query: 4 ggaattcagggcatcagtcttgctgttttaccttcccctgtcaataagcctgtctgcaac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ggaattcagggcatcagtcttgctgttttaccttcccctgtcaataagcctgtctgcaac 256
Query: 64 atttaaactgttcagaaagcacttgcctatgttgcggatgggccgggtgctgttcttgtg 123
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 255 atttaaactgttcagaaagcacttacctatgttgcggatgggccgggtgctgttcttgtg 196
Query: 124 aaccaatcacctagtgaataggggagccaatcaatgggcgagtaggcgggactgccgggt 183
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct: 195 aaccaatcacctagtgaataggggagccaatcactgggcgagtagacgggactgctgggt 136
Query: 184 tggagggagaaagaaataggtagcagggg---cgagttaggtcccgtttggaatgggaca 240
||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 135 tggagagagaaaaaaataggtagcagggggggcgagttaggtcccgtttggaatgggaca 76
Query: 241 gccgaggggtaagatgtagctgctagagttttcctgttttcatggcgtatccgcaaggat 300
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 75 gccgaggggtaagatgtagctgctagagttttcctgttt-catggcggatccgcaaggat 17
Query: 301 tcactagaggaatcag 316
||||||||||||||||
Sbjct: 16 tcactagaggaatcag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_c24.g1 MSMg01no508_c24.g1 CHROMAT_FILE:
MSMg01no508_c24.g1 PHD_FILE: MSMg01no508_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:01 2005
(579 letters)
>mm_chr4_128991866_128992840
Length = 975
Score = 1073 bits (555), Expect = 0.0
Identities = 572/579 (98%), Gaps = 4/579 (0%)
Strand = Plus / Plus
Query: 1 aaggccaggctggtccacaagagtgagttcgaggatggatggccagagctacatagtaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggccaggctggtccacaagagtgagttcgaggatggatggccagagctacatagtaag 260
Query: 61 aaaaagggagcaccaataagccagcttgtcctctcctctagtccttaagccctggcattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaagggagcaccaataagccagcttgtcctctcctctagtccttaagccctggcattt 320
Query: 121 ggaaagctgaggcaggtagatagctatgaattaaatccagcctgcttcacacagtgaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaagctgaggcaggtagatagctatgaattaaatccagcctgcttcacacagtgaaat 380
Query: 181 cctatctcaaaaaacaaaaacaaaaaaaccacaaagcaacacaattctttactgggaaac 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 cctatctcaaaaaacaaaaacaaaaaaaccacaaagcaacacaattctttactgggggac 440
Query: 241 agtggtaaagaacccaggtacagttctaagcacccactatcatcagtatctgcacgccaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtggtaaagaacccaggtacagttctaagcacccactatcatcagtatctgcacgccaa 500
Query: 301 ggggatctgatgccctcacttcggcttccaaaggcactgcatgcaaatggggcacataaa 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 ggggatctgatgccctcacttcggcctccaaaggcactgcatgcaaatggggcacataaa 560
Query: 361 aaaaagcaggaagaacactcaatcaggtaaataaatccaaaacaaaacctgttaggtctt 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaa-gcaggaagaacactcaatcaggtaaataaatccaaaacaaaacctgttaggtctt 619
Query: 421 tatggtctcaagactatcttaaatacaaggctgtgacatcacaaactgctaaaagatttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tatggtctcaagactatcttaaatacaaggctgtgacatcacaaactgctaaaagatttt 679
Query: 481 aaaattctctttaaagaaataagaacatcttgtgctgatctcggcagcacatatactaaa 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 680 aaaattctctttaaagaaataa---catcttgtgctgatctcggcagcacatatactaaa 736
Query: 541 gaaataagtacatcttaacatcttaaacaaagctctaaa 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gaaataagtacatcttaacatcttaaacaaagctctaaa 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 975
Length adjustment: 10
Effective length of query: 569
Effective length of database: 965
Effective search space: 549085
Effective search space used: 549085
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
