NNNNAAAACCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGA
TCCGCGGAATTCTACACAACGTGCCCAATGTAGTTTCTCTTGTGATAAAA
GGACAAAATTGAGACACATAATGACTAAACACCATTTCTAAGATTACAAA
TTGAGTATGTGCTGATGGCAGAAAAATAAACATGGTTCCTGGGATGTGAG
AGTAAAGCCTATATCCACCTGCTGTTCTGCCCTGCCTCCTAGTCACACAA
AGATGCTAGGATCACTTAGAGCTGCTAGGTCAGAATAACTGTTCTTGCCT
ACATGAAGCCATTTCTACACCAAGTCACTATGCTGAAAATGTTAGTCAAA
AGCCTCATGGGAAAATTGTCCTCTGCATTAGTAAACACTAAATCTAAGTA
ATTGGTACAGTGACCAAGCCATATACCTGGAGGTAGGAAATTACTGTACA
GGGACATGAATGCTCTGATGGTATCGTGATGAGAGCCAGTCACCCACCAG
GTGCCCACAGTATCCAGGAATTGGTACAGGACCTAAAAAGTAGGGAGCTT
CCTTGGCTGGCTATAGGACAGTGGACAAATATCCTGCCCCTTCTTCCTTA
AATTTCACAGTAGGGGTTTAGATAGGAAGAGCTCTGAGCTCTGTTGGATC
TAGCATGTTCAAACTCCAGGATTTTCTTTGGTTTGAGTTTTAAGTGGGAA
GAACCCTTAGACTTCAAGGNNTTGTGTTGTTGCTGCTGTTGTTGAATAAC
ATGTATTGGTTGGAATCCATATTT

TTTTTTTACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTCTGGGGCCTGTGA
GCTCCCTAATCATGGGTTCTTGCCCTGATTTATTGTATGAGGCAGGTGTT
TTCTCCTGTGGAATAGGCCTTAAGTTTCATGAGAAAGCAGTTGGCTACTC
TTATAACACTTGTACTGTTACTGTACCCATGAGTATATTTTGCCATGCTG
GTCATTATTGTAGTTCACAGGGTTCACAGCTGGAGGACTGTTAAGTTTTT
TCCTCCAGCAGCCTACACAGCAACTTCCAATCTGTGAAAACCAGCCAGCA
GGAGGAAAGCCTCCTGATCAATATGAACTTGATTTCTCTATGTTCTGTGA
CCAACGTGTTCACGTCTAGGTTCCTGAGCTCAATCTCTAGACTGAGCTCT
AAGTAACTTCACTAATTCATGTCCTCACCAGTAGTGTACAAAGATTCTCC
TTTGAATTACTTTTTGTTGCTGTGATAAAACACCACACACGGGCTGGTGA
GATGGCTCAGTGGGTAAGAGCACCTGGCTGCTCTTCCAAAGGTCCGGAGT
TCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATCT
GACACCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACTTATT
ATAATTAAAAAAAAAAACCCACCCACACACCACAATTAACAGTTATTTAT
GGGAAAGAAAGATTATTTCCGACAGCAAGTTGGGATATG

Query= MSMg01no508_e23.b1 MSMg01no508_e23.b1 CHROMAT_FILE:
MSMg01no508_e23.b1 PHD_FILE: MSMg01no508_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:11 2005
         (563 letters)



>mm_chr4_12540133_12541095
          Length = 963

 Score = 1052 bits (544), Expect = 0.0
 Identities = 553/556 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   ggaattctacacaacgtgcccaatgtagtttctcttgtgataaaaggacaaaattgagac 67
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ggaattctacacaaagtggccaatgtagtttctcttgtgataaaaggacaaaattgagac 704

                                                                       
Query: 68  acataatgactaaacaccatttctaagattacaaattgagtatgtgctgatggcagaaaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 acataatgactaaacaccatttctaagattacaaattgagtatgtgctgatggcagaaaa 644

                                                                       
Query: 128 ataaacatggttcctgggatgtgagagtaaagcctatatccacctgctgttctgccctgc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ataaacatggttcctgggatgtgagagtaaagcctatatccacctgctgttctgccctgc 584

                                                                       
Query: 188 ctcctagtcacacaaagatgctaggatcacttagagctgctaggtcagaataactgttct 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctcctagtcacacaaagatgctaggatcacttagagctgctaggtcagaataactgttct 524

                                                                       
Query: 248 tgcctacatgaagccatttctacaccaagtcactatgctgaaaatgttagtcaaaagcct 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tgcctacatgaagccatttctacaccaagtcactatgctgaaaatgttagtcaaaagcct 464

                                                                       
Query: 308 catgggaaaattgtcctctgcattagtaaacactaaatctaagtaattggtacagtgacc 367
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 catgggaaaattgtgctctgcattagtaaacactaaatctaagtaattggtacagtgacc 404

                                                                       
Query: 368 aagccatatacctggaggtaggaaattactgtacagggacatgaatgctctgatggtatc 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aagccatatacctggaggtaggaaattactgtacagggacatgaatgctctgatggtatc 344

                                                                       
Query: 428 gtgatgagagccagtcacccaccaggtgcccacagtatccaggaattggtacaggaccta 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gtgatgagagccagtcacccaccaggtgcccacagtatccaggaattggtacaggaccta 284

                                                                       
Query: 488 aaaagtagggagcttccttggctggctataggacagtggacaaatatcctgccccttctt 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aaaagtagggagcttccttggctggctataggacagtggacaaatatcctgccccttctt 224

                           
Query: 548 ccttaaatttcacagt 563
           ||||||||||||||||
Sbjct: 223 ccttaaatttcacagt 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)