Query= MSMg01no508_k17.b1 MSMg01no508_k17.b1 CHROMAT_FILE:
MSMg01no508_k17.b1 PHD_FILE: MSMg01no508_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:39 2005
(571 letters)
>mm_chr4_12697448_12698417
Length = 970
Score = 1065 bits (551), Expect = 0.0
Identities = 566/571 (99%), Gaps = 1/571 (0%)
Strand = Plus / Plus
Query: 1 aatgatcagcaatggctctttaaaatgtgggccaccagagctggtttgcttggctctaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgatcagcaatggctctttaaaatgtgggccaccagagctggtttgcttggctctaac 260
Query: 61 atgccggactgttagtcacatgacctagacagtactttcatatgataatatcaggagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgccggactgttagtcacatgacctagacagtactttcatatgataatatcaggagcca 320
Query: 121 ttgctcttctgtctgcgcagtgcttgccgttcttatttaaatgaattccatctgtttaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgctcttctgtctgcgcagtgcttgccgttcttatttaaatgaattccatctgtttaga 380
Query: 181 aagaattcttctttcagaagctcacagtatctgctttcctaatcagacaaaagaaattct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaattcttctttcagaagctcacagtatctgctttcctaatcagacaaaagaaattct 440
Query: 241 tcattacaatattttgttctctcacactaattcatccagttatcactggcaaggcttgca 300
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 tcattacaataaagtgttctctcacactaattcatccagtcatcactggcaaggcttgca 500
Query: 301 aaggtctgtgctgacttgtgactactgtaataacttttaagcagtttaaaaaaacaaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggtctgtgctgacttgtgactactgtaataacttttaagcagtttaaaaaaacaaaac 560
Query: 361 aaacaaaacaaaacagcatttaaataatcagtatgtcatttaatttctatgttaccaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacaaaacaaaacagcatttaaataatcagtatgtcatttaatttctatgttaccaaaa 620
Query: 421 gtatataatttctttccacctgcataactaccacccatgttctagtgtgacagtaattga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtatataatttctttccacctgcataactaccacccatgttctagtgtgacagtaattga 680
Query: 481 aagccatcagtcttgttttaaaaaaaaatagcatacctttctttaactataaatatttgt 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 aagccatcagtcttgttttaaaaaaaa-tagcatacctttctttaactataaatatttgt 739
Query: 541 tttttgggcattgttgtcaaaaatatgaagg 571
|||||||||||||||||||||||||||||||
Sbjct: 740 tttttgggcattgttgtcaaaaatatgaagg 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space: 538560
Effective search space used: 538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_k17.g1 MSMg01no508_k17.g1 CHROMAT_FILE:
MSMg01no508_k17.g1 PHD_FILE: MSMg01no508_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:39 2005
(242 letters)
>mm_chr4_12913931_12914572
Length = 642
Score = 468 bits (242), Expect = e-136
Identities = 242/242 (100%)
Strand = Plus / Minus
Query: 1 aacagtgaagtaaatcaagattaacttgtacacagagatcaactccccttctacatgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aacagtgaagtaaatcaagattaacttgtacacagagatcaactccccttctacatgtct 383
Query: 61 tttctatgcattttaattacatattacagagacacacacatttaaacaaaacaatgccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttctatgcattttaattacatattacagagacacacacatttaaacaaaacaatgccat 323
Query: 121 gccatgtaattttataaagaacttttcagtctctcatcattcagttaaatacttaccatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gccatgtaattttataaagaacttttcagtctctcatcattcagttaaatacttaccatt 263
Query: 181 ttaaggacgataccattcttactttattggcagacagggctcatttgtgctcttgtgcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttaaggacgataccattcttactttattggcagacagggctcatttgtgctcttgtgcta 203
Query: 241 gg 242
||
Sbjct: 202 gg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
