BAC Information

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BAC

Clone NameMSMg01-508M07
Chromosome4 (Build37)
Map Location 14,678,868 - 14,679,177
singlet/doubletsinglet
Overlap gene1700034K16Rik
Upstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7
Downstream geneOtud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64, LOC100040095
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508M07.T7 (MSMg01no508_m07.b1)MSMg01-508M07.TJ (MSMg01no508_m07.g1)
ACCAG582603AG582604
length7511,473
length of high quality
(start - end)
308 (330 - 637)---
definitionCHROMAT_FILE: MSMg01no508_m07.b1 PHD_FILE: MSMg01no508_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:47 2005CHROMAT_FILE: MSMg01no508_m07.g1 PHD_FILE: MSMg01no508_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAGAGGGGC
GGAATTCCTCCAGTTTCAAGAAAGAGGTTGAGAGGGAGTGGCCAGAGGAC
ATACTCAATAAGTGATATCTGAACTGGACTCTCTTCACACAGTACAGTTA
AGTCTGTTGCAGATCCAAACTAAGTTTTACACTTTACCAAAGTGTAGTGG
GTTGAATAGTTCCATCTACCCAAAAACAGCATATCACAGAATTATAGCTA
GGATGAAGTCATTGTGACTAAGGGCAGACAGAAGTCCAAGGACTTGTATC
TTTCTAAGAGGAAAAACAAAATAATATTTATTTAAACTACTAAACCAGCT
ATTTCCATAACTGTCAGTGTTCCACATACTGTCCACTCACTGTGGATCAT
GAGTTACATTTTGGAAATCGCACTCTGTCAAAGAAAGTTTAAAATAAAAG
ATGCCAATTTCTGATAATCTATTTCCTCAAAGGCCTGCTCATTCCAATCT
ATTCTGATAAATGAAAGTATTCAAAAAAAGTAACTATTTTTAAAAGGTCC
AGTAATTAAAACCAAATATCTGAAATATACTGCTTGAAGGAGAGTATTCA
AAATATAATGTTAAGTGAAAAAAATTTTTAAGAAGTATAATTTCAATTTT
ATTCTAAAGTGAATATGTAAAAATTAAATACTTACAGAAGAATAACATAT
TGTTCCTTGAAAAAAAAACTTAAAGGCACATCATACTTTGTAGTTTACAA
N
TTCTTTATTCCTTATTNTCGTGCNAGGGNNNATGAAGAGGCGACGGNGAT
AGTTTCTCTCCCCGATCCTCGACAGAGAGGAACCGCCATAGTAAGGAAGA
TGTATCCGCGCGTGCAGACGTACACCCGCAGGCCCTCGCCCGACCCGAAT
TAATCTCAAAATGGACGTATATAATAACGTATGTGTGCATGTACTCTGAG
CGTAATGATCAAGGCGTTGTTCTGTATCTTCTTCGCCGCAACTGCAATAC
TTTCAAATATCATAATAATTACATATTCTCTGCCTGCGCTATGGACGACC
GCTCTATCTTTGCTACCTTGGTCACTCTACTATGTTGTATTAATTCGCAC
CATATAATCCTCTTCAGTTAGACATGTATGACTTGCTATTCATCTCTACT
CCTATATTGATATATATCTATACTCGTGTATTGTCGAGATGTCGAGCGGA
TATACGTTTTACCGCTGCCCGGCGAGACGGACAGTATGTCATCCANCCAC
AGTAGTCGCAGTGACCACGATGTGTGTGATTCCATAAGTCGCCCCCCTCG
CCGCCGCGGGCTATGTGTCTGTGTGGAGCTATTGTATATGGGGTGAGTCG
CAGGTATAACTCGCCCTGTATGTCTTCCCTCGCCGAGACAGTATCGTGGG
GCGTGCTCTATACCGTATAACAGGCGCGTTCTCGTGTTAGCGCCGTCTAT
GACGCACATATTCGTCTATTCTATCCCTTCTCGCAGTGCAATTTATCGAC
GCGATATGTCGCGCTACGCTGCGCGCACCGCGCGGATATTGTGACGTTCT
GGATGTTAGCGTACAGTTGCTGTTGGGTACGGCGTCATCCCGCACTTCTC
ACTAACTACATACGNCAGTAGACACCGTTGTTCATGCGGATGAATTATAG
ATTAGCCATTGTGCTAGTATTTACTGTTGAACTATTTCTACATATCACGC
TCATACACGACGATCGTGTATTCTTGAACGCTNGCATATCTGTGTATCCG
ACTTCGTTAGCTACTGCGCACACTCGCCACTCTCTCGCATTATTTGTATC
TTCTGCGCCTCTCTTACTGTATTTATTTATATCCTCGCGACCTGTGTATA
CTCTCCACAGATCCAATCCACGATCTGTGGTGCACAGATAAACAACGACT
GGCTCGCAGCGATCAGAGATGTCACATGTTTGATTACAATGACTTGTAGC
ACGAAGTCACACCACGCCTCAGGAGACATTATTGATGTGACTACTCTACG
ANACTGCCGCTCACGACATGATATATATTTAGTAATAAATTACTGAAACA
TCAATATGTATAGGCTGCAACGACGCCACGTTAGTGTGTGTGTGCGTGCG
CACACTAGACATTGTTGTTGCGTGCGCACGTGGAAGATCAGATAATATAT
GCAGAGTATGTATATAGTACGGGTCTCTAGCCACACGCGATTATATCGCG
ACACCTCGCATCGTGTAGACATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_m07.b1 MSMg01no508_m07.b1 CHROMAT_FILE:
MSMg01no508_m07.b1 PHD_FILE: MSMg01no508_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:47 2005
         (308 letters)



>mm_chr4_14678668_14679377
          Length = 710

 Score =  487 bits (252), Expect = e-142
 Identities = 296/312 (94%), Gaps = 6/312 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttaaactactaaaccagctatttccataactgtcagtgttccacatactgtccactca 60
           |||||||||||||| |||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 201 atttaaactactaagccagctatttccataattgccactgttccacatactgtccactca 260

                                                                       
Query: 61  ctgtggatcatgagttacattttggaaatcgcactctgtcaaagaaagtttaaaataaaa 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ctgtggatcatgagttacattttggaaatctcactctgtcaaagaaagtttaaaataaaa 320

                                                                       
Query: 121 gatgccaatttctgataatctatttcctcaaaggcctgctcattccaatctattctgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgccaatttctgataatctatttcctcaaaggcctgctcattccaatctattctgata 380

                                                                       
Query: 181 aatgaaagtattcaaaaaaagtaactat--t-tttaaaaggtccagtaattaaaaccaaa 237
           |||||||||||  ||||||||||| |||  | ||||||||||||||||||||||||||||
Sbjct: 381 aatgaaagtat--aaaaaaagtaaatatgatctttaaaaggtccagtaattaaaaccaaa 438

                                                                       
Query: 238 tatctgaaatatactgcttgaaggagagtattcaaaatataatgttaagtgaaaaaaatt 297
           || |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 439 taactgaaatatattgcttgaaggagagtattcaatatataatgttaagtgaaaaagatt 498

                       
Query: 298 ttt-aagaagta 308
           ||| ||||||||
Sbjct: 499 ttttaagaagta 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 710
Length adjustment: 9
Effective length of query: 299
Effective length of database: 701
Effective search space:   209599
Effective search space used:   209599
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)