Query= MSMg01no508_n22.b1 MSMg01no508_n22.b1 CHROMAT_FILE:
MSMg01no508_n22.b1 PHD_FILE: MSMg01no508_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:56 2005
(643 letters)
>mm_chr4_36917912_36918954
Length = 1043
Score = 1151 bits (595), Expect = 0.0
Identities = 628/641 (97%), Gaps = 5/641 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagtaagaatgttacctattcagtaacattcagaattacctctagtattgtaag 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcagtaagaatgttacctattcagtaacattcagaattacctctagtattgtaaa 266
Query: 64 agagacagtgaaagaaatcaggcattacaatttattagaatagagctagtaatctcaggg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agagacagtgaaagaaatcaggcattacaatttattagaatagagctagtaatctcaggg 326
Query: 124 ctagtctacatagtatacttagaacaatagcagagtcactcccctacacacaggaattta 183
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 327 ctagtctacatagtatacttagaacaatagcagagtcactcccctacacataggaattta 386
Query: 184 caatggcctagagggaaggtagactatacaatggactagaattggaattatggcaagggc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 caatggcctagagggaaggtagactatacaatggactagaattggaattatggcaagggc 446
Query: 244 tgacttctaagattaagctgaccttaggtgggg-ctgcttttgatcccagttgttaacat 302
| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 447 t----tctgagattaagctgaccttaggtgggggctgcttttgatcccagttgttaacat 502
Query: 303 tgatttttatcccaattggttcctgttagctttttgtacacattcctctcttttgtgtaa 362
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 503 tgatttttatcccaattggttccttttagctttttgtacacattcctctcttttgtgtaa 562
Query: 363 aagtcacttataagtctggtgcactctttgagacattacattcagatataacactccctt 422
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 563 aagtcacttataagtctggtgctctctttgagacattacattcagatacaacactccctt 622
Query: 423 gtgtccgtatttgtttgccacttttcactgactccctgcccacctgtaccaggactctga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtgtccgtatttgtttgccacttttcactgactccctgcccacctgtaccaggactctga 682
Query: 483 ttctcctgggaggcgctgactgagtccaacctgtagcaagtacataatctttatttaggg 542
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttctcctgggaggcgctgactgaatccaacctgtagcaagtacataatctttatttaggg 742
Query: 543 aaaaggggttctataatacccatgtagcaaaattatatgtttttgtaataaaatctgtta 602
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aaaaggggttctataataaccatgtagcaaaattatatgtttttgtaataaaatctgtta 802
Query: 603 tagtatctaatatgcctacttaacaatatttttattaatct 643
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tagtatctaatatgcctacttaacaatatttttattaatct 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_n22.g1 MSMg01no508_n22.g1 CHROMAT_FILE:
MSMg01no508_n22.g1 PHD_FILE: MSMg01no508_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:56 2005
(535 letters)
>mm_chr4_37111061_37111994
Length = 934
Score = 833 bits (431), Expect = 0.0
Identities = 511/539 (94%), Gaps = 10/539 (1%)
Strand = Plus / Minus
Query: 1 ttaatgatatttacttaaggagccca-ttttttgtttattttgtttttgtttgtttgttt 59
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 924 ttaatgatatttacttaaggagcccatttttttgtttattttgtttttgtttgtttgttt 865
Query: 60 gtt--tttc--aagacagggtttctctgtatagctttggctgtcgtggaactcattctgt 115
||| |||| ||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 864 gtttgtttcttgagacagggtttttctgtatagctttggctgtcgtggaactcactctgt 805
Query: 116 agaccagactgacctagaactcagaaatccacctgtctctgtctcctaagtgctgggatt 175
||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 804 agatcagactggcctagaactcagaaatccacctgtctctgtctcctaaatgctgggatt 745
Query: 176 aaaggcaggggcctgaaattttaatgctcagacaat-acttttttcttggccccccaccc 234
||||||||||||||||| |||||||||||||||||| | ||||||||| |||||||||||
Sbjct: 744 aaaggcaggggcctgaatttttaatgctcagacaataatttttttctt-gccccccaccc 686
Query: 235 caaatgattttgatatattgaacaattctccttagtcaaaaacctcttaatatgaaaaac 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caaatgattttgatatattgaacaattctccttagtcaaaaacctcttaatatgaaaaac 626
Query: 295 cttgtccatgatagaaagcttaatcatgaacccaataatattatggagaaaaacaaaggg 354
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 625 cttgtccatgatagaaagcttaatcatgaacccaataatattatgga-aaaaataaaggg 567
Query: 355 attgaataaagcacattatggaagcagtaggaa-gctatgggcactacagaaacgccctt 413
|||||| |||||| ||| ||||||||| |||| |||||||||||| |||||| ||||||
Sbjct: 566 attgaacaaagcatgttagggaagcagt-ggaaagctatgggcactgcagaaatgccctt 508
Query: 414 ctccagacccacttatcacctctccttcatcttagatacctcatttctcctcttacatct 473
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 507 ctccagacccacttagcacctctccttcatcttagatacctcttttctcctcttacatct 448
Query: 474 aatatatgagtcaccccatctgaaaagtcattgatgaccattggacactgaggatctga 532
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aatatatgagtcaacccatctgaaaagtcattgatgaccattggacactgaggatctga 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 934
Length adjustment: 10
Effective length of query: 525
Effective length of database: 924
Effective search space: 485100
Effective search space used: 485100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
