BAC Information

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BAC

Clone NameMSMg01-508O14
Chromosome4 (Build37)
Map Location 85,277,690 - 85,338,874
singlet/doubletdoublet
Overlap geneA930009N24
Upstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
Downstream geneLOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508O14.T7 (MSMg01no508_o14.b1)MSMg01-508O14.TJ (MSMg01no508_o14.g1)
ACCAG582713AG582714
length745740
length of high quality
(start - end)		412 (334 - 745)663 (78 - 740)
definitionCHROMAT_FILE: MSMg01no508_o14.b1 PHD_FILE: MSMg01no508_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:59 2005CHROMAT_FILE: MSMg01no508_o14.g1 PHD_FILE: MSMg01no508_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,338,463 - 85,338,874)(85,277,690 - 85,278,352)
sequence
TTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGAGACGAG
GCGCGGAATTCTTTGACTACCAAGACACCCGTATACACAGAATGGATAGT
CCACTCAGAACACATAGGTGATGTAGGTAGGGTTAGAAAAAGAAAAGAAC
AAAACTAACCCCACAGAAAGCAAGTACATTCCTGTAGGAGTTTGAAACAA
CAAATAATTTTTCATCATCATGCATATTTGACTATCATATTTGATAGACA
ATAATGGTAGCTAATATCCATTTTCTTTCATCTCATCTGTCTAACTTGTA
AAATATGCTCTACAAGAAGTAATATTCTTTTTAATCTAATGAGTGATTTC
CTCTCTCAGAGCATTACAGAATGCATCAGTTCCTCAACCTAGAATTCTAC
CGGAGACCTTCTCATCTTCCCAACTCCCCAGCATGACTTAAAACTCTTCC
CTTCTTTCCTTTCTCCTTTGATCTGCCTTCTGCACAGTGACAATCCCACA
CTCCTCTCTAATGAACTCGATCCTTATCCAGCCAATCTCTTTTTTAGCCC
TCGGTGCAAGTGCTATCTTCCTCAAGATGACTTACAGGGTGTGCTCAAGT
GATTTTTCCTCACTGCAAACTAATTCATTTGTTTTTTCAAGGCCAAATCT
CCGTTCTGCACAAAGCCTTCCGATTCTATCACCGGGAATGGCTGGAAACG
TTAGTGAAATCTAGTTCTCAGTTCCTAAAGACGTTATTAGATCAG

NNCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTTATGGTGAAAAAATGGGG
ATGTTTCCAGGTTTCAAGATTAGATTCATGACTGAATGAGAGTATGGACA
ACCCCTCAGCTTGGTGTCCTAGTTTGGAACTATTGAACAACCATATTTCA
TATCCAGTCCTCAGTTATCTTTTTAAGCTCATCAGCCTCTCAAGTGGTAT
CTTATGATAAGCATCTACTGTTTGGTACTTTTGAGCCCATCCATTGCCTA
AGTCCTTCTGAGGGCAGAGACCTCTTGTATAGGTGTACATCCTACATATA
AGCCATTAAGTAGCCATTCAGTATGTTTTCAATGCTTACTTTCTTCTTCT
GACTTCTATAACACTTTCCCCCAGCCTTCCTCTGCAGCTCTGTACCTTCA
CTTGTGGTATTTCCTCTCCCTTAGCTCCTTTCTCAAAGCAAAAGCTAGAA
CTTCAGGTGAGGGCTCACACTCTCCTCTCTGAGTCTTCTGGCCGTTCTGT
ACTCCTTCTCTTCTTTAAGTTGTTTTCTGTTCTCATGGTTTTCTATTTAT
TTTAAAAAGATTTATCTGTTTATTTTTATGGTTATGAGTGCTTTATTTGC
AAGTATCTAAGTCCAACATGTATGTTTGGCTCTCACAAAAGTTAAAAGAG
TGGACTAGATCCCTTAGAACCGGAATTAAGATTGTGAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_o14.b1 MSMg01no508_o14.b1 CHROMAT_FILE:
MSMg01no508_o14.b1 PHD_FILE: MSMg01no508_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:59 2005
         (412 letters)



>mm_chr4_85338263_85339074
          Length = 812

 Score =  750 bits (388), Expect = 0.0
 Identities = 406/412 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctaatgagtgatttcctctctcagagcattacagaatgcatcagttcctcaacctaga 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 atctaatgagtggtttcctctctcagagcattacagaatgcatcagttcctcaacctaga 553

                                                                       
Query: 61  attctaccggagaccttctcatcttcccaactccccagcatgacttaaaactcttccctt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||
Sbjct: 552 attctaccggagaccttctcatcttcccaactccccagcatgacttaaaattcttctttt 493

                                                                       
Query: 121 ctttcctttctcctttgatctgccttctgcacagtgacaatcccacactcctctctaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctttcctttctcctttgatctgccttctgcacagtgacaatcccacactcctctctaatg 433

                                                                       
Query: 181 aactcgatccttatccagccaatctcttttttagccctcggtgcaagtgctatcttcctc 240
           | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agctcgatcctcatccagccaatctcttttttagccctcggtgcaagtgctatcttcctc 373

                                                                       
Query: 241 aagatgacttacagggtgtgctcaagtgatttttcctcactgcaaactaattcatttgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aagatgacttacagggtgtgctcaagtgatttttcctcactgcaaactaattcatttgtt 313

                                                                       
Query: 301 ttttcaaggccaaatctccgttctgcacaaagccttccgattctatcaccgggaatggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttttcaaggccaaatctccgttctgcacaaagccttccgattctatcaccgggaatggct 253

                                                               
Query: 361 ggaaacgttagtgaaatctagttctcagttcctaaagacgttattagatcag 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggaaacgttagtgaaatctagttctcagttcctaaagacgttattagatcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no508_o14.g1 MSMg01no508_o14.g1 CHROMAT_FILE:
MSMg01no508_o14.g1 PHD_FILE: MSMg01no508_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:59 2005
         (663 letters)



>mm_chr4_85277490_85278552
          Length = 1063

 Score = 1282 bits (663), Expect = 0.0
 Identities = 663/663 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatttatggtgaaaaaatggggatgtttccaggtttcaagattagattcatgactgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatttatggtgaaaaaatggggatgtttccaggtttcaagattagattcatgactgaat 260

                                                                       
Query: 61  gagagtatggacaacccctcagcttggtgtcctagtttggaactattgaacaaccatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagagtatggacaacccctcagcttggtgtcctagtttggaactattgaacaaccatatt 320

                                                                       
Query: 121 tcatatccagtcctcagttatctttttaagctcatcagcctctcaagtggtatcttatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatatccagtcctcagttatctttttaagctcatcagcctctcaagtggtatcttatga 380

                                                                       
Query: 181 taagcatctactgtttggtacttttgagcccatccattgcctaagtccttctgagggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagcatctactgtttggtacttttgagcccatccattgcctaagtccttctgagggcag 440

                                                                       
Query: 241 agacctcttgtataggtgtacatcctacatataagccattaagtagccattcagtatgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacctcttgtataggtgtacatcctacatataagccattaagtagccattcagtatgtt 500

                                                                       
Query: 301 ttcaatgcttactttcttcttctgacttctataacactttcccccagccttcctctgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcaatgcttactttcttcttctgacttctataacactttcccccagccttcctctgcag 560

                                                                       
Query: 361 ctctgtaccttcacttgtggtatttcctctcccttagctcctttctcaaagcaaaagcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctgtaccttcacttgtggtatttcctctcccttagctcctttctcaaagcaaaagcta 620

                                                                       
Query: 421 gaacttcaggtgagggctcacactctcctctctgagtcttctggccgttctgtactcctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaacttcaggtgagggctcacactctcctctctgagtcttctggccgttctgtactcctt 680

                                                                       
Query: 481 ctcttctttaagttgttttctgttctcatggttttctatttattttaaaaagatttatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcttctttaagttgttttctgttctcatggttttctatttattttaaaaagatttatct 740

                                                                       
Query: 541 gtttatttttatggttatgagtgctttatttgcaagtatctaagtccaacatgtatgttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtttatttttatggttatgagtgctttatttgcaagtatctaagtccaacatgtatgttt 800

                                                                       
Query: 601 ggctctcacaaaagttaaaagagtggactagatcccttagaaccggaattaagattgtga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggctctcacaaaagttaaaagagtggactagatcccttagaaccggaattaagattgtga 860

              
Query: 661 gct 663
           |||
Sbjct: 861 gct 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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