BAC Information

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BAC

Clone NameMSMg01-509A11
Chromosome4 (Build37)
Map Location 46,724,392 - 46,840,047
singlet/doubletdoublet
Overlap geneGabbr2
Upstream geneGm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2
Downstream geneAnks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509A11.T7 (MSMg01no509_a11.b1)MSMg01-509A11.TJ (MSMg01no509_a11.g1)
ACCAG582802AG582803
length746746
length of high quality
(start - end)
313 (323 - 635)150 (93 - 242)
definitionCHROMAT_FILE: MSMg01no509_a11.b1 PHD_FILE: MSMg01no509_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:08 2005CHROMAT_FILE: MSMg01no509_a11.g1 PHD_FILE: MSMg01no509_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,724,392 - 46,724,702)(46,839,898 - 46,840,047)
sequence
NAACTATXXXXXXXXXXXXXXXXXXXXXXXXXATTCCAGTATGGATGCGC
GGAATTCATTACTACTAAAATTCTCAAATGAAAAGGTAATCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCACTGTCACTTCTTGGT
TCTTATCTTACTTGCTCTAAAGGCAGCACTTGGCATGGCTTATCAAAACC
TCCTTCTTGAAGCATTTTTCCCTTTGGTTTCCAAGAACTTGTGTGATTTT
TCCAAAGGCACAGCCTTCCCTCCCTGTATCTGAATCCACTGAACTCACAT
GACTTTCTTCCCATCCGTCNTATGCATCTCCAGCCAGGCATCCCTTTCTG
TCTCCCGCCTACATCCCTGGACCCTGAGCATCACTGTGTTCTTGGACTCT
TCCTTGGTCCCACCTCTAGTGCATCCCTGTGCCCTGAGTTGAGGCCTTCA
CAGGGAACCTCTGATGTCACCTGCTTGTTGACCTCTCTCAGGTCCCTCCT
GCACCCCACATCTCTCCCTGAAACCCAGAACTGTATCGTCAACACTCACG
CTCATTACTAAAAGTGGCACTTAAAAAATGTTATTTTCCTTTCTGCCAAG
AATCCAAATCATATTTTACAAGCGCTTTAAGCATCCTTGGCAGGTTTATT
AACACCTCCCGTATATGAGTTGCAGAAACAAGCAATTTTCCCATCCGTGT
ACAGGCGGAAGAACGGCTGAGACATCACAATCTTTTCTACCCGTGT
CCCATTGTTATGGGTTGGCNGAAGGCCGCCCTTCAAACTCTTTATGTGAA
CNANATATCACCAAAAAAATTCTCNNGNNCACCCGGAGTGGCCAGGACAG
AGGGCTACAACTTGTACAACCATGGGACTCCAGGTCTGTGTGATTCCCTC
TCCCTCACAGCCTGGAGTGAGCACAGAACCACGGGCTCTAGGGCAGGCTC
TGCCAGCCATGACTGGCATCTGCGAGTCCAGCTCCTGGTCTATATTTTGT
GATTAGCACACAGCCGCACTCGCTGCTTCTTGTGTTGCCTACAGCTTCTC
TTGTAATACTTTTGTAGTTTTTAGTTGGGACAGAGCCCAGAAGGCCTGTG
AAAACTAAATATTTATGCTCTGGCCCCTTGCAGAGGAACCTGGCTTTCTC
TTGCTATCGCGGACCATAGGAAGAAATCAGACTAAAGTTAGGTCTTGAGT
TCAGTGTTTTCTAGCTGTGTGATCTTGGGTGGCTGTCTTGACCTCTCTGC
GTCTTATTATACTTACCCACACATTGCTTATAACTATGTCTTTAAGTCTA
CACTAGTGGCCTGAAGTAATGTCCTGTCATGAGTGAGGGACTAGAGGGAT
GGTGGCACTAAAGGCTCTGGTCCTAAACACTCTCAGGTCCTAAAGCTGCT
TATATTTCTAGGACATCCTATGGTTGCTTGTCCCCTGGGCTTCCCCTGTG
GCACGCCTGTGCCGCACATCATTCTGCTGTGATAGTTCCTTACGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_a11.b1 MSMg01no509_a11.b1 CHROMAT_FILE:
MSMg01no509_a11.b1 PHD_FILE: MSMg01no509_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:08 2005
         (313 letters)



>mm_chr4_46724191_46724903
          Length = 713

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   gcatctccagccaggcatccctttctgtctcccgcctacatccctggaccctgagcatca 61
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 202 gcatctccagccaggcatccctttctgtctcccacctacatccctggaccctgagcatca 261

                                                                       
Query: 62  ctgtgttcttggactcttccttggtcccacctctagtgcatccctgtgccctgagttgag 121
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctgtgttcctggactcttccttggtcccacctctagtgcatccctgtgccctgagttgag 321

                                                                       
Query: 122 gccttcacagggaacctctgatgtcacctgcttgttgacctctctcaggtccctcctgca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gccttcacagggaacctctgatgtcacctgcttgttgacctctctcaggtccctcctgca 381

                                                                       
Query: 182 ccccacatctctccctgaaacccagaactgtatcgtcaacactcacgctcattactaaaa 241
           |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 382 ccccacatctctccctgaaacccagaactgtatcatcaacagtcacgctcattactaaaa 441

                                                                       
Query: 242 gtggcacttaaaaaatgttattttcctttctgccaagaatccaaatcatattttacaagc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gtggcacttaaaaaatgttattttcctttctgccaagaatccaaatcatattttacaagc 501

                      
Query: 302 gctttaagcat 312
           |||||||||||
Sbjct: 502 gctttaagcat 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no509_a11.g1 MSMg01no509_a11.g1 CHROMAT_FILE:
MSMg01no509_a11.g1 PHD_FILE: MSMg01no509_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:09 2005
         (150 letters)



>mm_chr4_46839698_46840247
          Length = 550

 Score =  252 bits (130), Expect = 1e-71
 Identities = 145/150 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagagggctacaacttgtacaaccatgggactccaggtctgtgtgattccctctc 60
           |||||||||||||||||||  ||| ||||||||||||||||||||||||| |||||||||
Sbjct: 350 caggacagagggctacaacaagtagaaccatgggactccaggtctgtgtggttccctctc 291

                                                                       
Query: 61  cctcacagcctggagtgagcacagaaccacgggctctagggcaggctctgccagccatga 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cctcacagcctgcagtgagcacagaaccacgggctctagggcaggctctgccagccatga 231

                                         
Query: 121 ctggcatctgcgagtccagctcctggtcta 150
           ||||||||||||||||||||||||||||||
Sbjct: 230 ctggcatctgcgagtccagctcctggtcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 550
Length adjustment: 8
Effective length of query: 142
Effective length of database: 542
Effective search space:    76964
Effective search space used:    76964
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)