BAC Information

Click to search

BAC

Clone NameMSMg01-509A17
Chromosome4 (Build37)
Map Location 16,240,309 - 16,240,419
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150
Downstream geneLOC383994, LOC100040154, LOC667212, LOC100040173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509A17.T7 (MSMg01no509_a17.b1)MSMg01-509A17.TJ (MSMg01no509_a17.g1)
ACCAG582814AG582815
length793766
length of high quality
(start - end)
114 (199 - 312)395 (325 - 719)
definitionCHROMAT_FILE: MSMg01no509_a17.b1 PHD_FILE: MSMg01no509_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:10 2005CHROMAT_FILE: MSMg01no509_a17.g1 PHD_FILE: MSMg01no509_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTAATATTTGGGTCGCAAAACGAGTCATTATGCGTAAAGGATCCGCGGA
ATTCCATTCTGTCTTCAAGATGAAGACAAGCCTACGAGCAACTTTGGAGG
ATTTAAGGTAGATAATCTTCTTGGTTTGTCCCAAGAATTTTAGATCTAAA
TTCTGAAAGTTTTAAGCAAACTGGTATATGGGCTCCCAACACAGATAAGT
GAAGGAAGAGTGTTGTCCCTACCACTGACATTTCTCAGATAGTTCCACAA
TAGTCAGGTTGCTTTCTGCCCAAATCAGGCTTGGGCTTACACAACTCCAT
AGAGACAAAGGTCTTTTTATTATAAAGCTAATCTAGCTGATATGATTGGA
AGGCCCTTGGACCCATTGTAGCCCTTCCTTCTTTGCCCTCCCTTCCTCTC
TCCTGAATTGAGCTATATATTAGCTAGCCCTATTTCAACAAACGAGCTGA
ATTTTTATACATTTCTTGGTCTCCTTGGGCATTCATTGTCACCTAGATCC
TGCTTCCTATCTCCTCATCTCTTTGAGACTGTATGTACATTACATCTGAT
AGTATTGGGTGACTCTCTCCTGGTACCATGTCGTCTCCTTTTGATGATTG
ATATAGGCCTGATCTTTTATAATAGTCCCCCTGTGTATAAACCCCGGGTT
CCTTTGAATATGTTCCTACTTAACTTTCCTACTTTTTCCTTCTCTTTGGA
ATATCTTCAGGGCGATTGTTCTGGGAAATTCGACCGGGTCTATTCTATCA
CACGAATTGTGTCCTCTTTTTCATGTGTTTATCTTCCCATTTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCGGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTTTTATAAACTGGATATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGAAACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATA
AGTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTT
CCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGAACACTAT
GCCCCTCCTTAGAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_a17.b1 MSMg01no509_a17.b1 CHROMAT_FILE:
MSMg01no509_a17.b1 PHD_FILE: MSMg01no509_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:10 2005
         (114 letters)



>mm_chr4_16240107_16240620
          Length = 514

 Score =  215 bits (111), Expect = 8e-61
 Identities = 111/111 (100%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaaggaagagtgttgtccctaccactgacatttctcagatagttccacaatagtcaggtt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaaggaagagtgttgtccctaccactgacatttctcagatagttccacaatagtcaggtt 262

                                                              
Query: 63  gctttctgcccaaatcaggcttgggcttacacaactccatagagacaaagg 113
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gctttctgcccaaatcaggcttgggcttacacaactccatagagacaaagg 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)