BAC Information

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BAC

Clone NameMSMg01-509D11
Chromosome4 (Build37)
Map Location 49,093,118 - 49,093,430
singlet/doubletsinglet
Overlap geneE130309F12Rik
Upstream geneNr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream geneLOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509D11.T7 (MSMg01no509_d11.b1)MSMg01-509D11.TJ (MSMg01no509_d11.g1)
ACCAG582946AG582947
length746751
length of high quality
(start - end)
314 (324 - 637)279 (365 - 643)
definitionCHROMAT_FILE: MSMg01no509_d11.b1 PHD_FILE: MSMg01no509_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:23 2005CHROMAT_FILE: MSMg01no509_d11.g1 PHD_FILE: MSMg01no509_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATAATTTGCGGCCGCAAAAAGAATCACATCCCAAACAGGATCCG
CGGAATTCATTCTCCTGGATACCGAGTGAATACATTACCTCAGAATACTG
AATGATTAACAAAAAGTGCATCTCAAGTATTTACTTAGAATATCCTCCTT
CCAAAGACTTGATACACCGAGGTTGTCTTTAGTGTGGCCTTGGTATTGTA
AACATGCATGAAGTAGAGGCTGTCAATTACAATGAGAAAAGATTCCTTTG
GAAACCATGATATAAAATCCAAATGTATCCTAAGCAGACAATAGCTTTAA
ACATGACAGTTGAAATTATANGAGGTTAATGGTGTCCATGGGCTAGAGAA
TCTCAAAACATCCATATTGTCCACTGTGCCACTTCAGTGTACTTCTGTAA
TGTGGAGCCACATTGCCCACCACAATAACCAGACAGATCAATAAAGTTAA
AACAAGAATTCCCGCAGGAGGTGATTCAGGGGGAGAAAAGCCCCATGAAA
TTGGATTATGACATGAAGGGCCTCTGTGTGAGTGTTGAAAATATATGTAA
GTGATTTTATATGACCTAAAGCAGAGGACCAAGAGCCGGTGATTACATAA
ATAATGGAGCAGGAAGACAGCACATGAGTATTTAAGGGTTTTCAAGACAA
TGATGAAGTATAAGGCTGTCACTGCACTGAGAGCCTCTGATCCAATTCTA
TAAGGAATTGGTTAGCTGATCTTTTGATTTGCTTGAAACATTTGGC
NNACTATGATAGTGNGTAGGNNTGGNGGNCGCCGGTCAATACTAATTTAG
GNGAACTATAGTTGCATCAAAGGAATCCTGATCTTTCCAAAACTTTTATC
ATGAATGGGTGTTGGATCTTGCCAAATGCTTTTTCTGCATCTAACGAGAT
GATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACCTTGA
TGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTATT
TGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAG
AATTTTATTGATGTTTGTTGCATCGATATTCATAAGAGAAATTGGTCTGA
AGTTCTCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATA
GTGGCTTCATAAAATGAGTTGGGTAGAGTATCTTCTACTTCTATTTTGTG
AAATTGTTTGTGCAGAACTGGAATTAAATCTTCTTTGAAGGTCTGATAGA
ACTCTGCACTAAACCCATCTGGTCCTCGGCTTTTTTTGTTTGGGAGACTA
TTAATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTC
AACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGT
CCTTTTCTTCCAGGTTTTCCAGTTTTGCTGAGTATAGCATTTTGTAGAAG
GATCTGATGGTGTTTTGGATTTCTTCAGGATCTGCTGTTATGTCTCCCTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_d11.b1 MSMg01no509_d11.b1 CHROMAT_FILE:
MSMg01no509_d11.b1 PHD_FILE: MSMg01no509_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:23 2005
         (314 letters)



>mm_chr4_49092918_49093630
          Length = 713

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%), Gaps = 1/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggttaatggtgtccatgggctagagaatctcaaaacatccatattgtccactgtgccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ggttaatggtgtccatgggctagagaatctcaaaacatccatattgtccactgtgccact 454

                                                                       
Query: 61  tcagtgtacttctgtaatgtggagccacattgcccaccacaataaccagacagatcaata 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 453 tcagtgtacttctgtaatgtggagccacattgcccaccacaataaccagacagatcgata 394

                                                                       
Query: 121 aagttaaaacaagaattcccgcaggaggtgattcagggggagaaaagccccatgaaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 393 aagttaaaacaagaattcccgcaggaggtgattcagggggagaaaag-cccatgaaattg 335

                                                                       
Query: 181 gattatgacatgaagggcctctgtgtgagtgttgaaaatatatgtaagtgattttatatg 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 334 gattatgacatgaagggcctctgtgtgagtgttgaaaatatctgtaagtgattttatatg 275

                                                                       
Query: 241 acctaaagcagaggaccaagagccggtgattacataaataatggagcaggaagacagcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 acctaaagcagaggaccaagagccggtgattacataaataatggagcaggaagacagcac 215

                         
Query: 301 atgagtatttaagg 314
           ||||||||||||||
Sbjct: 214 atgagtatttaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 713
Length adjustment: 9
Effective length of query: 305
Effective length of database: 704
Effective search space:   214720
Effective search space used:   214720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)