BAC Information

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BAC

Clone NameMSMg01-509F13
Chromosome4 (Build37)
Map Location 120,240,187 - 120,240,782
singlet/doubletsinglet
Overlap geneCtps
Upstream geneFoxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6, Scmh1, Slfnl1
Downstream geneEG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509F13.T7 (MSMg01no509_f13.b1)MSMg01-509F13.TJ (MSMg01no509_f13.g1)
ACCAG583045AG583046
length760779
length of high quality
(start - end)
596 (75 - 670)291 (327 - 617)
definitionCHROMAT_FILE: MSMg01no509_f13.b1 PHD_FILE: MSMg01no509_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:33 2005CHROMAT_FILE: MSMg01no509_f13.g1 PHD_FILE: MSMg01no509_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGACGATGCGC
GGAATTCACCTTTTTCTGAACCTTAGCTTATTTTTGTTTTAATTTGGCTT
CACACAGGGTTTTTAGAGGGGGGAAGTGTCTTCTCTGTGCTAAAGCAAGC
ATTTCTTGATGCTTGGTGGCGGCATTTTCTCTTTTTGGTCACATTTGGCT
TTGCTGACCAATTGGTGGCCTCTGAAGCTGGGGACTGGTGATAAATCTTT
TGACATGTCACTATGTCATTGCGTATTGATGCTGTTTTCACTTGACATTC
AACTCTGCTGGTCTTGTATCTATTCTACTTGTCTCACATGTTTCTTTTAC
TCCCTGCCACTACATTATTACCCTATGGGTTTATGAGTTTAATGTTATCT
TCCCTATTCAGTGTGTGCTTCTGACTGGGTTATTTCACAAGTTCCATTTC
CTGCAGCCTGTATCATTTCTGTAGGGCATACCTGGGAGAGATTGCTGCCA
AGAAGCAACTTAAAGTACAGATGAGAACTGCATGTAATTGAAGGAACTAG
AGGGTTTTTAAGACTTCTTTTAAAGGCTCAACAGTTCTTTTCTGTTGGTC
AGTCTTCCAGAACTTTGTTTTCTCTGTGTGATAGCAAATTTTCAAGGAGA
ATTTGAATGCTTATTCAAGATTGTGATTTCCCCCACCCTCCCATACCAGG
CAAGTGTCTCAATATTTACCCCGGGTGGGGAAAAAACAATCACAGTCTTG
AATAAACTAC
NACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATCATAGGGTTACATTGCCCCA
TCCCGTAATATCTTTGCTCATTTACAGTAAAGTGAACATCCATCAGGAAT
GCTTTCACGAAGATCTTTTTTTTACATTAGTTTTTATGTGTGTGGATGTT
TTGTTTGTATGTATGTATGTATGTATGTATACCACTTGTGAGTTTGGTGC
CTTCAGATGCCAGACTAAGGTATCGGATCCCTTGGAACTAGAGTTGCAGT
CCATTTCGAGCTGCCTTATGTTTTTCTGGAACTGAACTTTGGTGGCCTGG
AAAAGCAATTGGTGTTTTTAACCACTGACCTATCTCTCTAGCCCCTGCAA
CAAAATAAGAAAGAACTTACCAACATTAGTTGTGACTTTAGTAGATACTT
TATGTGTATGCCTGTGTATGTATATGTATTAGAAAATGCATGCATGTATA
TAAGCCAGATATTAATTTGTATGTGTTCTTCAATTGGCCCTCTACCTCAT
TTTTTGAGACAGTTTCTCACTGAACCTGAAACTCACAGATTTGACTAGGC
TGGCTAGGCAGCAAGCTCTAAAGATTCTCCCCTCTCTATTTTCCAAGCAC
TGGGATTGCAGGTACATACCACCACACACAGCTTTTACCTGTATGCAGGG
CTCACACTCAAGAACTCATGCTTGTGCAGGCATCCCTTTATAGACTAAGT
CATCCCCCAGTTCCCAGATTAATCAGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_f13.b1 MSMg01no509_f13.b1 CHROMAT_FILE:
MSMg01no509_f13.b1 PHD_FILE: MSMg01no509_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:33 2005
         (596 letters)



>mm_chr4_120239987_120240982
          Length = 996

 Score = 1122 bits (580), Expect = 0.0
 Identities = 592/596 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcttatttttgttttaatttggcttcacacagggtttttagaggggggaagtgtcttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 agcttatttttgttttaatttggcttcacacagggtttttagaggggggaagtgtcttct 737

                                                                       
Query: 61  ctgtgctaaagcaagcatttcttgatgcttggtggcggcattttctctttttggtcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctgtgctaaagcaagcatttcttgatgcttggtggcggcattttctctttttggtcacat 677

                                                                       
Query: 121 ttggctttgctgaccaattggtggcctctgaagctggggactggtgataaatcttttgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttggctttgctgaccaattggtggcctctgaagctggggactggtgataaatcttttgac 617

                                                                       
Query: 181 atgtcactatgtcattgcgtattgatgctgttttcacttgacattcaactctgctggtct 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 616 atgtcactatgtcattgcgtattgatgctgttttcacttgacatttaactctgctggtct 557

                                                                       
Query: 241 tgtatctattctacttgtctcacatgtttcttttactccctgccactacattattaccct 300
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgtatccactctacttgtctcacatgtttcttttactccctgccactacattattaccct 497

                                                                       
Query: 301 atgggtttatgagtttaatgttatcttccctattcagtgtgtgcttctgactgggttatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atgggtttatgagtttaatgttatcttccctattcagtgtgtgcttctgactgggttatt 437

                                                                       
Query: 361 tcacaagttccatttcctgcagcctgtatcatttctgtagggcatacctgggagagattg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 436 tcacaagttccatttcctgcagcctgtatcatttctgtagggcatacctgtgagagattg 377

                                                                       
Query: 421 ctgccaagaagcaacttaaagtacagatgagaactgcatgtaattgaaggaactagaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ctgccaagaagcaacttaaagtacagatgagaactgcatgtaattgaaggaactagaggg 317

                                                                       
Query: 481 tttttaagacttcttttaaaggctcaacagttcttttctgttggtcagtcttccagaact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tttttaagacttcttttaaaggctcaacagttcttttctgttggtcagtcttccagaact 257

                                                                   
Query: 541 ttgttttctctgtgtgatagcaaattttcaaggagaatttgaatgcttattcaaga 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttgttttctctgtgtgatagcaaattttcaaggagaatttgaatgcttattcaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)