TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAAGATCCGCGGAA
TTCTAAGGGATATCCCCAAGCCTAAAAGGACACGGATAGTATGTACTTAC
TTATAAGTGGATATTAACCATAAAATACAGCATACAAATGTTATAGTCAA
CAGACTCAGAGAAGTTAAATAATAAGGAGAGCCCAAGGGAGGATGTTTGA
ATATCACTCAGAAGTGGAAATATGATAGTCACTGGAAGTTAATTGAGGAA
GGGAACTTAATGGGAGAGGGGATTTGGAGGGAAATGGGCATGGTGGTTGG
GTGTAAGGATTGNNNNCNTTTTTTTTTTTTTNANCNNNNNNNNCNNNNCN
NNNCNNNNNNNTCTTTTTTTTCTTTCTTCTTTCCCCTTCCTCTTTTCCTC
CCCCTTTTTTTTTTTTTTCCCCCCCCCCCCTTTTTTTTTTCTCTTCTTTT
TTTCCTTTTCTCTCTTCCCTTCCTTCCTTTTTCTTCCTTTTCCCCCCCTT
TTCTCCTCCCCTTTTCCTTTTTTTTCTCTTTTCCTCCCTTTTTTTTTTCT
CCTCCCTTTTCTTTTCCCCTCCTTTTTTTTCCCCCTCTTTCTTCCCCTCC
CCTTTTCCTTTCTTTTTCTTCTTTTTCTCTTTTCCCTTTTCCTTTTTTTC
CCTTCCTTTTTTCCCTCCTCCCCTTCTTTCTTCTTCCCCCTCTTTTTTTT
TCTCCCCTTTTTTCTTTCTCTTCCCTTCTCCTTTTCCCTTCTTTCTTTTT
TTCCTCTTTCTTTCTTCTCCCTCTTCCTTTTCTTCCCCCTCCCCCCCCCC
TCTTTTTTTTCCCTTCCCTCTTCCTTTTTTTTTCTCTTTTTTTTTCTCTC
CCTTTN

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTAAGGTGTTGAAATTGATCTGATA
ATGTCTCTATCCACATCTGAATATTTTCTCATAGTCTTTTAGGAAAAATA
ATGTGCAGATTATATAGTCGACAGTTAGCTATAAAATTATAAGATTAAAG
GCCTTATTTACATGAGGCTCTTACACTAGTTATATGTTAGTTCCCTCATG
TCAATAACTAACATAGGTGTACTAAGGACTATTACTGCAATAAAGAAAAA
CAATATTTTTACATAGCTTAGCTGCTTTTATATTTAGGTGTTTTCTAAAT
TGTGAAGTGTATAAAGGTAGTGTGCATCACTACACAAATGTTAATATTAC
TAAATATCAAATTAAAAAGAAGTAACAGAATACATGCTTCCAAAAGCTAT
AAAATTATTGTGAGAATTACAAAAACCACCAATGTCTTATTTCTCTTGGG
TTTGAGTGCCATCTTTCTCCTCTCATTTCCCCTTTCTTATATCCCTCTCT
CTATTGCTTTCTTCTTTACATTCTCACTTACTTTCAGATTCTGGGTACAA
CTGATAATTTAAACTTCACGAGTTCATTACTTAAGATAATTCAGTATTAT
CTATATGGCATTCCTACCATGGATCTTTATTTTTCTTGGCTNAGACAGTC
ACTGAAAGCCAGTGCTGCATGCGACCCTAATATTTTGTCAAAATCCTTTT
TTATATTAAGAGATCGGGGNCATTACTAGGCAGAAAGGGGGAATACCAGN

Query= MSMg01no509_k23.g1 MSMg01no509_k23.g1 CHROMAT_FILE:
MSMg01no509_k23.g1 PHD_FILE: MSMg01no509_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:00 2005
         (544 letters)



>mm_chr4_78847487_78848431
          Length = 945

 Score = 1015 bits (525), Expect = 0.0
 Identities = 540/545 (99%), Gaps = 1/545 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaggtgttgaaattgatctgataatgtctctatccacatctgaatattttctcatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attaaggtgttgaaattgatctgataatgtctctatccacatctgaatattttctcatag 686

                                                                       
Query: 61  tcttttaggaaaaataatgtgcagattatatagtcgacagttagctataaaattataaga 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 685 tcttttaggaaaaataatgtgcagattatatagtcgacagttaactataaaattataaga 626

                                                                       
Query: 121 ttaaaggccttatttacatgaggctcttacactagttatatgttagttccctcatgtcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttaaaggccttatttacatgaggctcttacactagttatatgttagttccctcatgtcaa 566

                                                                       
Query: 181 taactaacataggtgtactaaggactattactgcaataaagaaaaacaatatttttacat 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 565 taactaacataggtgtactaaggactattactgcaataaataaaaacaatatttttacat 506

                                                                       
Query: 241 agcttagctgcttttatatttaggtgttttctaaattgtgaagtgtataaaggtagtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcttagctgcttttatatttaggtgttttctaaattgtgaagtgtataaaggtagtgtg 446

                                                                       
Query: 301 catcactacacaaatgttaatattactaaatatcaaattaaaaagaagtaacagaataca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catcactacacaaatgttaatattactaaatatcaaattaaaaagaagtaacagaataca 386

                                                                       
Query: 361 tgcttccaaaagctataaaattattgtgagaattacaaaaaccaccaatgtcttatttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcttccaaaagctataaaattattgtgagaattacaaaaaccaccaatgtcttatttct 326

                                                                       
Query: 421 cttgggtttgagtgccatctttctcctctcatttcccctttcttatatccctctctctat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 325 cttgggtttgagtgccatctttctcctctcatttcccctttcttatatccctctctctac 266

                                                                       
Query: 481 tgctttcttcttta-cattctcacttactttcagattctgggtacaactgataatttaaa 539
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcttttttctttaacattctcacttactttcagattctgggtacaactgataatttaaa 206

                
Query: 540 cttca 544
           |||||
Sbjct: 205 cttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 945
Length adjustment: 10
Effective length of query: 534
Effective length of database: 935
Effective search space:   499290
Effective search space used:   499290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)