BAC Information

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BAC

Clone NameMSMg01-509L24
Chromosome4 (Build37)
Map Location 116,576,178 - 116,576,748
singlet/doubletsinglet
Overlap geneZswim5
Upstream geneDmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048
Downstream geneUrod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509L24.T7 (MSMg01no509_l24.b1)MSMg01-509L24.TJ (MSMg01no509_l24.g1)
ACCAG583352AG583353
length802794
length of high quality
(start - end)		578 (78 - 655)540 (75 - 614)
definitionCHROMAT_FILE: MSMg01no509_l24.b1 PHD_FILE: MSMg01no509_l24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:05 2005CHROMAT_FILE: MSMg01no509_l24.g1 PHD_FILE: MSMg01no509_l24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTATTTCTTCCCTCAGGTCTCATTTCCCCTATTAAAGCAG
CAGCTGTTATGAATTTAGTTTCTATGTTAGTGATTTTTCTCCTTGTTGTG
AACAGGTACCTCTCAAAAGGCAATTTAAGGGAGAACTTGTATTCACGTAC
AGTTTTGAGGGATGCTGTTCCTGATGGTAGGGAAGGTGTGGCGGCGGGTA
GCTCTAACTGTGGGAGTCGCCTGCGTGATCACATCTCATGGATAAGGAAG
CAGACTCCTGTCATTTGGTTCTCACTCCATCCTCTTTATCCAGACTCTAG
TTTGTGTTGGTGCTACACATAGTCTTGCAGTGTTTCCTCTCCTTAGCTAA
TCCTCTGTAGGAAATCTCTCTCAGACATATCCAAGTGCGCCTGGTTGATG
TTCTAGGGAATGTCATCAAGGTGACAGTCAAAACAACCACCCTATGTTCA
TCCTTTATTAATTTGATACCCAAAGCAGTGGTTCTCAACCTCCCTAATAC
TGCAGCCCTTCAACATCATGACCCCCACAGCTGAATATTGCTACTTTTAT
AACTGTATTTTGCTACTGCTATGTATTGTAATGTAACTATCTGTGTTTTC
CAATGGTCTTAGGCAACCTCTGTGCCTAACCAGGGACCAATGGGGTGAGA
ACTGTGGCTTTAAAGTGTAATATTCCACTCATGGGCCCCACTTGGCCCAG
GGTTAATCTTTTTCTCTTGCTCAGAAATTATTTATTTTTATTTTCATCCA
AN

CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTATGTAGTTCTGGCTGCTCTCTCT
CTGTAGACGAGGCTGACCTCAAATTCAGAGATCTGCCTGCCTCTGCCTCC
CAAGTGCTGGGATTAAACACATGCATCACTACTAGCTGGCTTCCCCATAC
CTCTTAACCTGGCTTTTATCCAAAGTTCATATCTCATATTAAGCACCACT
TACTCTAGACCTTACTGTATTTCCAAGAATAGACAAAGCCTGTACTCATA
AGTAAACACGATATAGATTTGTGCTTTTGACTAGTTGTGGTGGTGCATAC
CTTGAATCTCAGCACTTGGGAGACACGGCAGCAAAATCTCTGAGTTCTAG
GACAGCCTGGTCTACATAATGAATGTCAGGACAGTCAGGGCTATGGAGAG
AGACCCTGTCTCAAACAAAACAGAACAGAACAGAACAGAACAAACAAAAA
AACAACAACCAAAAAGCCAGAGCACCGAGCACACATATGTGCACAGACAT
ACATGTGGGCAAAACATCCATACACATAAAATTTTATTTTTTTTCTTTTA
AAGAAAGGCTTCTAGAAGGAGAAGAAAAAAAGGAGCAATGCCCAAGGCTA
AGCAATACTGTATTAAAGGGGAATAANGGTACAAGACTGTGTTTTACAAA
GATGAACTAAAACCAAATGCTTTAAAATCACCGGGCATGTCTTAAAATAT
ACTAACTTCTAAATTTCATTCTTAGACTAATCAATCCGAATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_l24.g1 MSMg01no509_l24.g1 CHROMAT_FILE:
MSMg01no509_l24.g1 PHD_FILE: MSMg01no509_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:05 2005
         (540 letters)



>mm_chr4_116576170_116577109
          Length = 940

 Score =  905 bits (468), Expect = 0.0
 Identities = 531/572 (92%), Gaps = 33/572 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatgtagttctggctgctctctctctgtagacgaggctgacctcaaattcagagatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tctatgtagttctggctgctctctctctgtagacgaggctgacctcaaattcagagatct 520

                                                                       
Query: 61  gcctgcctctgcctcccaagtgctgggattaaacacatgcatcactactagctggcttcc 120
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 519 gcctgcctctgcctcccaagtgctgggattaaacacatgcaccattactagctggcttcc 460

                                                                       
Query: 121 ccatacctcttaacctggcttttatccaaagttcatatctcatattaagcaccacttact 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 459 ccatacctcttaacctggcttttatccaaagttcatatcttatattaagcaccacttact 400

                                                                       
Query: 181 ctagaccttactgtatttccaagaatagacaaagcctgtactcataagtaaacacgatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 399 ctagaccttactgtatttccaagaatagacaaagcctgtactcataagtaaacacaatat 340

                                                                       
Query: 241 agatttgtgcttttgactagttgtggtggtgcataccttgaatctcagcacttgggagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agatttgtgcttttgactagttgtggtggtgcataccttgaatctcagcacttgggagac 280

                                                                       
Query: 301 acggcagcaaaatctctgagttctaggacagcctggtctacataatgaatgtcaggacag 360
           || ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 279 acagcagcaagatctctgagttctaggacagcctggtctatataatgaatgtcaggacag 220

                                                                       
Query: 361 tcagggctatggagagagaccctgtctcaaacaaaacagaacagaacagaacagaaca-- 418
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  
Sbjct: 219 tcagggctatggagagagaccctgtctcaaacagaacagaacagaacagaacagaacaga 160

                                                                       
Query: 419 -----------------------------aacaaaaaaacaacaaccaaaaagccagagc 449
                                        |||||||||||||||||||||||||||||||
Sbjct: 159 acagaacagaacagaacagaacagaacagaacaaaaaaacaacaaccaaaaagccagagc 100

                                                                       
Query: 450 accgag-cacacatatgtgcacagacatacatgtgggcaaaacatccatacacataaaat 508
           ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  acc-aggcacacatatgtgcacagacatacatgtgggcaaaacatccatacacataaaat 41

                                           
Query: 509 tttattttttttcttttaaagaaaggcttcta 540
           ||||||||||||||||||||||||||||||||
Sbjct: 40  tttattttttttcttttaaagaaaggcttcta 9


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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