BAC Information

Click to search

BAC

Clone NameMSMg01-509O05
Chromosome4 (Build37)
Map Location 11,729,166 - 11,729,265
singlet/doubletsinglet
Overlap geneCdh17
Upstream geneLOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem
Downstream genePpm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509O05.T7 (MSMg01no509_o05.b1)MSMg01-509O05.TJ (MSMg01no509_o05.g1)
ACCAG583456AG583457
length753751
length of high quality
(start - end)
100 (152 - 251)313 (333 - 645)
definitionCHROMAT_FILE: MSMg01no509_o05.b1 PHD_FILE: MSMg01no509_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:17 2005CHROMAT_FILE: MSMg01no509_o05.g1 PHD_FILE: MSMg01no509_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTCATAATTTGCGGCCGCAAAACAANTCACAAAATCGNTACTTCCGC
GGAANNCNGAAGGTAGCAGCAGTACCAGAGGCNNACACNACNANGGACAA
GGACACCGGGNNNNNAGTCACACCAAGAACNAAACAGNCGGNCCNCCCAN
AACACCAAGCAAATCTCTGCAAGAGCATTTTGGTAAAGGACATACACTGT
GCTGATGGGCAGAGTAGCTGGAGATTTCAGTGGCTCCCTCTGGAGTGTGG
ATCTCAGATTAGGCTTTTTGAAGTGCAACAACCAACCCTCAGGGATGACT
TTGAGCTCACCGGATGTTTTTTTTTATGTCATCATACACATACACATACA
CATACACATACTTATACACATACACATACACTTACACATACATATACACA
TACATATACACCTACATCGCCCCCCATATATTTTTCATAAATACATATAC
CACAGATATATATATACCACAAATATATACATACCACAAATATATATCTA
ATATTTACACACCATTTATATAGTATCTGAGTGTGCACTTGGTCTCAGCT
GTATGGTTTATACATGTGTGGGTGAACCTAGCATGTCTTGGATTGATGCT
GTCCATTCTCTTTGTTCCACATTTTTTTCTCCATTGACAACTCTCCAAGA
TGTAACCTATTGTACTCTCCAAATGACGTACTCCGGGATATTGTCCCGCC
CCGCACCGATTATATAACAGTGAGGGTGACATGTCCCTCATTTCTTTCCT
TTC
NCCCGATGATGTGGGAGGCCNGGNGGNCGCCTGGTCANCACTTGGAGGNG
AANTANAGAAGTACTAAAAAAAGTGGCCTTAAAGAGATAGCCTCTCTGGC
AATCTATCCCTTGCTTCTTGCAAGATGAGTGGGGATGAGAGCCCTGGGAT
GTATGCTTGTATTAGTGTGTGTGTTTGGCACATGTGTTAGGTGCAGCGTG
TGCAGGCCCGCACTTTCGCCATGGTAGCGTAGGCTTTTGCTGCAGTGGAT
TTTTTACAATCTCCTCAGATTCGGTTTGCCGCTCTAAAAGAAATTATGCT
GCGTTATGCCGTGGGGTTTGATGCCTTTCACCGCACAGAGGATAGCTTGC
TGTTGGCATCCTGTGGAAGGCATGTCTGATTGCATGAAGGTTCAGTGTCC
TAGTTCCCTTCCCCCCCCAAAAACGACACGGGAGCTGGCCAAGACCTCTC
TGGGTGATGAGCCTAAGGGATGGTTTTGTGTAGGGCCCCTATGCTTGCAC
ACTGGGGATCAGACCTCTACCTTCACCCATGAGGCTTGCTTGCAGCAATT
AAGATCTGGCCATAAGTTAATTAACATCCTGGCCTTTTGATGCACCTGCC
GCAAGCAAAACACAATCTCCCCAGGAGTGGCTTGGCATGATTGAGAAGTA
GTCAGTGATTTTACTCCCTGGGCATGTCACCAACCTAAGACAGGGATCAA
ACTAATGCTGTTTGTCACCCAAGGACTGGTAAGGCGTATGGCTGCTGGGT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_o05.b1 MSMg01no509_o05.b1 CHROMAT_FILE:
MSMg01no509_o05.b1 PHD_FILE: MSMg01no509_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:17 2005
         (100 letters)



>mm_chr4_11728966_11729465
          Length = 500

 Score =  170 bits (88), Expect = 2e-47
 Identities = 97/100 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaccaagcaaatctctgcaagagcattttggtaaaggacatacactgtgctgatgggca 60
           |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 acaccaagcatatctctgcaagagcattttggtaacggacatacactgtgctgatgggca 260

                                                   
Query: 61  gagtagctggagatttcagtggctccctctggagtgtgga 100
           |||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 gagtagctggagatttcagtggctccttctggagtgtgga 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 500
Length adjustment: 8
Effective length of query: 92
Effective length of database: 492
Effective search space:    45264
Effective search space used:    45264
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)