BAC Information

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BAC

Clone NameMSMg01-510G10
Chromosome4 (Build37)
Map Location 94,408,099 - 94,621,308
singlet/doubletdoublet
Overlap geneTek, 4930579C15Rik, LOC100039252, Mysm1
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74
Downstream geneLOC100039265, LOC665029, Jun, LOC100042411, 2310009E04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510G10.T7 (MSMg01no510_g10.b1)MSMg01-510G10.TJ (MSMg01no510_g10.g1)
ACCAG583846AG583847
length741734
length of high quality
(start - end)
273 (171 - 443)359 (327 - 685)
definitionCHROMAT_FILE: MSMg01no510_g10.b1 PHD_FILE: MSMg01no510_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:59 2005CHROMAT_FILE: MSMg01no510_g10.g1 PHD_FILE: MSMg01no510_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,408,099 - 94,408,371)(94,620,950 - 94,621,308)
sequence
ACACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAAAGATGCGC
GNGAATCATACATTTTTCCTTCTGTTCCAAACAGTTGTCTCACTGATGCT
AGAAACTGATTTCTGGATCGAAGATGACAAGAAGGAGGAGGTCATGTTCT
TGTTAGAAAGTAGAACACAGAAAGCTTGGTTTCTGCTGAAGGTCTCTGTT
AATTCCTGACTTTCATTCTGTACCCAAGCTTCCATGAACTTGAGTGAGGC
TTGGTGATCACACAAACAGCCTCAGGAGTTCTTCCTTCAAGTCAGTCTCT
AATAGTGTACTTCATTAATGTTTATTGGGATATAGAGCTTATATGTCTAG
TCTACTTGGTGGCCTGATATTCCTTTTTTGTTGAACAAACATAATGGAAG
AATAAAGACTCTGTATTTGCCTCAATAAAGGTTGCTCTGGGTAGCAAAGC
AGTCTGCTAAGGCATAAACTGGAAAAGGTTTGTGGCTTCCATAACAACTC
AGATTCTGGCGCTTGCTCCTTCCACTGGAGAATTATTGCCAATTTCAGCT
TGCAAACAAGTTCTCATAGAACTTAGCAGTGTTACCCCCTCTTTAATTCC
ATATCTATACCAAACCTGGCTGCACGCTCTAAAGAATTGTGTACACTTTA
AAATAAAAAACAAAACACCACTTCTGGTTCATCATGGATGTCCTATATGA
TTCACACTGGATAGGAAGTCTTCAGGTCACACATCCTTCAC
CCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGGGCGTGTNACTCCAAGGTGTCTGAA
TAGAAATATTTCTGATTGAATTTCTTTCTATAAACCTTGTTTCAGTGCCT
GGAGATAAGGTTCAGTCCCCAGCACCTACGGTGGCTCACAGCTCCATTAG
TCCAGCTCCAGGGAACCTGACGTTCTCTTCAGACTGTTATGGACACCAGG
CACATACAAACTTATAGACCTGCATCCAGGCAAAATACTGAGACACATAA
AGCAAAACTTTATAAATCTTTTTTATTAATAAATTTTAAAAATTGTTGTG
CTGTTTTTAGTGGTCAAACCTTTCTTAGTGTTTCTTTCTGGTTCCAAACA
TGTTTTTAAATCTACCCTTGCCTAGATTCTTTCTCCTCTCCATTTCTTTA
CATTTTGAAATAATATAGGGCTTCTTTTTACATTAGTTTAGCAGACTTGT
TACTCAATAATTTAAAAAGCATTTATTGAATCTCCATTGTAGTGGATCTA
TTATGATAGTGTTGGTGTGTGCATGTCTTTCTTTTGAGACAGTCTCAATA
TATAATCCCTGGTTGGCCTAGAGCTCACTGAGTAGACCAGGCTAACCTCT
GCCTCCAGATTTGTGGGATTAAAGGAATACATCATAACACTCAACCCGTC
CAAATTTTATGAGAAACTTCTTACTTTCTGATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_g10.b1 MSMg01no510_g10.b1 CHROMAT_FILE:
MSMg01no510_g10.b1 PHD_FILE: MSMg01no510_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:59 2005
         (273 letters)



>mm_chr4_94407899_94408571
          Length = 673

 Score =  489 bits (253), Expect = e-143
 Identities = 268/273 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagcttggtttctgctgaaggtctctgttaattcctgactttcattctgtacccaagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagcttggtttctgctgaaggtctctgttaattcctgactttcattctgtacccaagct 260

                                                                       
Query: 61  tccatgaacttgagtgaggcttggtgatcacacaaacagcctcaggagttcttccttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccatgaacttgagtgaggcttggtgatcacacaaacagcctcaggagttcttccttcaa 320

                                                                       
Query: 121 gtcagtctctaatagtgtacttcattaatgtttattgggatatagagcttatatgtctag 180
           ||||| |||||||||||||||||||||||||  |  ||||||||||||||||||||||||
Sbjct: 321 gtcagactctaatagtgtacttcattaatgtggaaggggatatagagcttatatgtctag 380

                                                                       
Query: 181 tctacttggtggcctgatattccttttttgttgaacaaacataatggaagaataaagact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctacttggtggcctgatattccttttttgttgaacaaacataatggaagaataaagact 440

                                            
Query: 241 ctgtatttgcctcaataaaggttgctctgggta 273
           |||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtatttgcctcaataaaggttgctctgggta 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no510_g10.g1 MSMg01no510_g10.g1 CHROMAT_FILE:
MSMg01no510_g10.g1 PHD_FILE: MSMg01no510_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:59 2005
         (359 letters)



>mm_chr4_94620857_94621615
          Length = 759

 Score =  694 bits (359), Expect = 0.0
 Identities = 359/359 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taataaattttaaaaattgttgtgctgtttttagtggtcaaacctttcttagtgtttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 taataaattttaaaaattgttgtgctgtttttagtggtcaaacctttcttagtgtttctt 393

                                                                       
Query: 61  tctggttccaaacatgtttttaaatctacccttgcctagattctttctcctctccatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tctggttccaaacatgtttttaaatctacccttgcctagattctttctcctctccatttc 333

                                                                       
Query: 121 tttacattttgaaataatatagggcttctttttacattagtttagcagacttgttactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tttacattttgaaataatatagggcttctttttacattagtttagcagacttgttactca 273

                                                                       
Query: 181 ataatttaaaaagcatttattgaatctccattgtagtggatctattatgatagtgttggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ataatttaaaaagcatttattgaatctccattgtagtggatctattatgatagtgttggt 213

                                                                       
Query: 241 gtgtgcatgtctttcttttgagacagtctcaatatataatccctggttggcctagagctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gtgtgcatgtctttcttttgagacagtctcaatatataatccctggttggcctagagctc 153

                                                                      
Query: 301 actgagtagaccaggctaacctctgcctccagatttgtgggattaaaggaatacatcat 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 actgagtagaccaggctaacctctgcctccagatttgtgggattaaaggaatacatcat 94


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)