Query= MSMg01no510_j23.b1 MSMg01no510_j23.b1 CHROMAT_FILE:
MSMg01no510_j23.b1 PHD_FILE: MSMg01no510_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:15 2005
(137 letters)
>mm_chr4_128332567_128333103
Length = 537
Score = 250 bits (129), Expect = 3e-71
Identities = 135/137 (98%)
Strand = Plus / Plus
Query: 1 cttcctcctccatctccgcgcctaggtctgctacagaaatgttgtcttctaattacccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcctcctccatctccgcgcctaggtctgctacagaaatgttgtcttctaattacccct 260
Query: 61 tcccccaattcactaagactggtggtcgcattaggctcgtggtgtaatttagccttcacc 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 261 tcccccaattcactaagactggtggccgcattaggctcgtggtgtaatttagccttcgcc 320
Query: 121 acaatagaaatgctagc 137
|||||||||||||||||
Sbjct: 321 acaatagaaatgctagc 337
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 537
Length adjustment: 8
Effective length of query: 129
Effective length of database: 529
Effective search space: 68241
Effective search space used: 68241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no510_j23.g1 MSMg01no510_j23.g1 CHROMAT_FILE:
MSMg01no510_j23.g1 PHD_FILE: MSMg01no510_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:15 2005
(593 letters)
>mm_chr4_128491682_128492674
Length = 993
Score = 843 bits (436), Expect = 0.0
Identities = 479/500 (95%), Gaps = 11/500 (2%)
Strand = Plus / Minus
Query: 105 atctcagagccctggtattctcaccagagatggagcttggtccttattctattggtcaat 164
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 522 atctcagagccctggtattctcaccagagatggagcttggtccttattctgttggccaat 463
Query: 165 tctcacatgaagagcttgaagcccagatgcaccaaataacatgccccgacaagctcaggg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tctcacatgaagagcttgaagcccagatgcaccaaataacatgccccgacaagctcaggg 403
Query: 225 atttaacagtatcaggagctagtgttctgtgtcctgccctgtctggatgaggctctggcc 284
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 402 atttaacagtatcaggagctagtgtccagtgtcctgccctgtctggatgaggctctggcc 343
Query: 285 tgttgctggccctgctctgttggtctgcctcccccc-----------ccaatcatcttaa 333
||||||||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct: 342 tgttgctggccctgctctgttggtctgcccccccccccccccccccgccactcatcttaa 283
Query: 334 tccctgatcccagccttcctgatgtcagagacaggaggatagctaaaaggaggcctttac 393
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tccctgatcccagtcttcctgatgtcagagacaggaggatagctaaaaggaggcctttac 223
Query: 394 cgctgggcaagtgagaaccaagctgaattacagagctggagttacagacttctggtggcc 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 cgctgggcaagtgagaaccaagctgaattacagagctggagttacagacttctggtggcc 163
Query: 454 tctggattgtcatataagcccagtcaggacattccttcctcctgttcaaaccccggttcc 513
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 162 tctggactgtcatataagcccaatcaggacattccttcctcctgttcaaaccccggttcc 103
Query: 514 tcagccttccggatttggataatatttaaccagaatttcctccataccttgggagaaatc 573
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 102 tcagccttccggatttggataatatttaaccagaatttcctccataccttggtagaaatc 43
Query: 574 caataatgtgctcaagagat 593
||||||||||||||||||||
Sbjct: 42 caataatgtgctcaagagat 23
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
