BAC Information

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BAC

Clone NameMSMg01-510L12
Chromosome4 (Build37)
Map Location 125,523,201 - 125,523,754
singlet/doubletsinglet
Overlap genenone
Upstream geneMtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2
Downstream geneCsf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510L12.T7 (MSMg01no510_l12.b1)MSMg01-510L12.TJ (MSMg01no510_l12.g1)
ACCAG584089AG584090
length731731
length of high quality
(start - end)
224 (82 - 305)555 (86 - 640)
definitionCHROMAT_FILE: MSMg01no510_l12.b1 PHD_FILE: MSMg01no510_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:22 2005CHROMAT_FILE: MSMg01no510_l12.g1 PHD_FILE: MSMg01no510_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCACTCATATTTGCGGCGCTAAACGACTACTATTTTCATAACGGGGCNGG
AATCNNTTGCTTCCTAAAGAGAGGAATGNGNGCTTGCGGTTCCCTAATTA
TTAAGGGCTGGGGTCATGAGATGCTGATTCATAGGATAATCAAAAGGAAA
CTTGAAGAAAATGACTGAATTGGTATATAAAATAAAAGATGGGGTGGGGG
GGTCATGAGCTTCAGGAGATGAGCTATCGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTTTAAAGATCTCCAGAGAAG
GGGGCATCAGAGGAAATTTATCTTTTTGAGAGAGAAAGCAGGGTGGAAGG
CCGTCTGGAGCTTATTATAGTCTGCCAGCAGCTTGGAAACACGATTTGAC
TTTGAGTCATTTGTTTTCACCGCTCCCAGATACCTCTTCTCTCAGAACCC
TCTCCAAGCCGAGGCTGGTCCTTGGCACAGGCTGAGAAGCCATCATGAAG
CAAGGAGACAAACCCAAGGCCTGGAGCCAGTAGCTCAGGAATCAGTACCT
GTAGGCAAGAAAGACAAGGGGGGGGGGGTTCCAGGGGCTTGTGACTGTGT
CAGCCCCATTGGGGTGCTGACAAGCAAGGGTTGGCAGTGAGAACTGGTCT
TTATTGCCATCAGATGTGCTACCCATGTGGGAGCGAGGCCAAGTTTGTCC
GTGGCTTATTTTTTCCTCCCATCTTCTCATC
NGCACATGAAGTGGGAGGCGGGNGGCGNCCGGTTTTCAAACAGGGNGAAN
NANANAAGTTACGAAAACAGCGGANGCNCCNNAGNGGCCCAGGNTGCTGG
AGTCTGATTCACTCCGCCATGATGATATCCTCTGTGTCTCATCTTCTCCC
ATCTGCTTAATCACATCAGTCTACCCTTTCTACCCCTGTACAAAGACAGT
AGCATTCTCCAAAGGTTTCCCATCCAGATCCCCACCTAGGCCGTATTTTC
TGGTCCTGCTCATCATTCCAACCCTCAACGCCATCACTCCCTAGAGCCAC
GGTAATTCTAGGTAATCGNTTCTCCCCTAACTCTGTGTCTGTGAATCGGC
TGGGTCTTGGCTGCTCTATCCGCCCTTGACTACTAGCCATATATTTGAGT
TTTGGTCTCCCGCCCAAGTCTCTTATCCTTCTGGGACACTGAGAGTCTGG
GGCACTGTCAGGCACGCCCTGCTCTTAGCAGTGGCAGAGTATGTATAAAT
GGAATGTTTCAAGATGCTTACTTGACATCCTGCCGGGCAAGGCAGGTTGC
GTGATAAATTCCTAATTCAAGGAGCAGAAAAATACACTCCCAACACCATG
AGACTGTGGCAAGTACATGGGCATGTATGTGACGCAGTCTCTTATAAGTA
TAGACTTGGCATCTGTTCCCAGTTAGGGTTACTGTTGCTGTGATGAAACA
CCGTGACCAAAGCACCTTGGGGGGAAAGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_l12.g1 MSMg01no510_l12.g1 CHROMAT_FILE:
MSMg01no510_l12.g1 PHD_FILE: MSMg01no510_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:22 2005
         (555 letters)



>mm_chr4_125523001_125523955
          Length = 955

 Score =  920 bits (476), Expect = 0.0
 Identities = 535/555 (96%), Gaps = 2/555 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcccaggntgctggagtctgattcactccgccatgatgatatcctctgtgtctcatctt 60
           |||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 201 ggcccaggttgctggagtctgattcactctgtcatgatgatatcctctgtgtctcatctt 260

                                                                       
Query: 61  ctcccatctgcttaatcacatcagtctaccctttctacccctgtacaaagacagtagcat 120
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcccatctgcagaatcacatcagtctaccctttctacccctgtacaaagacagtagcat 320

                                                                       
Query: 121 tctccaaaggtttcccatccagatccccacctaggccgtattttctggtcctgctcatca 180
           |||||||||||||||||||||||||||||||||||| | ||   ||||||||||||||||
Sbjct: 321 tctccaaaggtttcccatccagatccccacctaggctgcataaactggtcctgctcatca 380

                                                                       
Query: 181 ttccaaccctcaacgccatcactccctagagccacggtaattctaggtaatcgnt-tctc 239
           ||||||||||||| ||||||||||||||||||||||||||| ||||| || || | ||||
Sbjct: 381 ttccaaccctcaatgccatcactccctagagccacggtaatgctaggcaaccg-tctctc 439

                                                                       
Query: 240 ccctaactctgtgtctgtgaatcggctgggtcttggctgctctatccgcccttgactact 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccctaactctgtgtctgtgaatcggctgggtcttggctgctctatccgcccttgactact 499

                                                                       
Query: 300 agccatatatttgagttttggtctcccgcccaagtctcttatccttctgggacactgaga 359
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 500 agccatatatttgagttttggtctcctgcccaagtctcttatccttctgggacactgaga 559

                                                                       
Query: 360 gtctggggcactgtcaggcacgccctgctcttagcagtggcagagtatgtataaatggaa 419
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 560 gtctggggcactgtcaggcacgccctgctcttagcagtggcagagtgtgtataaatggaa 619

                                                                       
Query: 420 tgtttcaagatgcttacttgacatcctgccgggcaaggcaggttgcgtgataaattccta 479
           ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 620 tgtttcaagatgcttacttgacatcctgccgggcaaggcaggttgtgtggtaaattccta 679

                                                                       
Query: 480 attcaaggagcagaaaaatacactcccaacaccatgagactgtggcaagtacatgggcat 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 attcaaggagcagaaaaatacactcccaacaccatgagactgtggcaagtacatgggcat 739

                          
Query: 540 gtatgtgacgcagtc 554
           |||||||||||||||
Sbjct: 740 gtatgtgacgcagtc 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)