BAC Information

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BAC

Clone NameMSMg01-510M10
Chromosome4 (Build37)
Map Location 51,468,542 - 51,468,898
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040979, LOC666681, LOC100040814
Downstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510M10.T7 (MSMg01no510_m10.b1)MSMg01-510M10.TJ (MSMg01no510_m10.g1)
ACCAG584133AG584134
length1,110728
length of high quality
(start - end)
---355 (75 - 429)
definitionCHROMAT_FILE: MSMg01no510_m10.b1 PHD_FILE: MSMg01no510_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:26 2005CHROMAT_FILE: MSMg01no510_m10.g1 PHD_FILE: MSMg01no510_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCACCCCGGGTCTATTATCGCTGTTTTGTGGGGCCGCTGGCTCTTTCCCT
CCCCCGCAGCCCGTGGCCGCCTGTCGTTCATCCTCTCTTCTTGTGTGGTG
TGTGGGTGCCGTGTTGATTCACTTCGCTGTCTTTTTGTTCTTCCCCCGCT
TCCCCTCCCCGTCTCCTACCTTATTTCTTGCCCATACTACTCTGGCGAGT
GCGCCATGCGTCTGTTGCCGTGCGCGCTGTGTGTCGGTGCGCCGGCGTCT
CAGTTCTTTTGCGGCGTGCGGCGGGTTGTGTATATGTTGTCGTACGCGTT
AGGCCCGCCTCGACACCGTCGCTTGTGCATTTATGGCGCCTTGTGATCTC
TCCNTTCGGCGCCCGTCTTCGTACGGTGGTTGCGTCCCTCTTGCCGCGTG
CGGCTGGCCGCGCGCTCCACTTGCATCCCACCATGTCCATCCGTTCTCCT
GCTTCCCTCCTTCTCGTTTTTCCCCCGCCGTCGCGGTCTGCTTACGTGTC
GCGCGTAGAGTGGTCTCTGTTCGACACTATACTTTGGCGCGCGCACGGTG
CTCACTTTCCTGCTCGTACTCACCGTGGGCCATGGTGCCGTGTGGATTCC
CTTCGTGATCAGCCCCGTTGCTCCTCTGTGCGTGTCGGGAGTCTTATTGG
CGGTGGGCCGGGTGCCGCGTGGGACCGCTGTTTGGCCGCGGCGGCCCCCG
GGGATCTCTGCGGCCGCTTCGCCTTCCTGGTGAGTTTACCACTTGGACGG
GTGCCCTCGAGTGGAGTATACCCACACAACCTGCGATCTCGTTCCTGCTG
TCGCGTAGACGTGGCCGTGAGTCGCGGACGACAATGTTTTGTGGCAGCGC
GTGGGCGAAACACCGCGAATCAAGCGCGCGCGCATATGGGCGTGCGCGTA
GGCGGCGGTGATCAGAGTAACGGCGCCGTGCGCGGGTNGAAGGGCGCTCG
ATGCCGAGATACGTCTACCGCGTCGGGAGTCGCGGCGCCGAGAAAGATGA
CACAAGAAGCGCAGGCGGTATGTGCCGCGGCGGGCGCGAATATGCGAAGC
ATGATAGTATAGTGCGCCACGCGCGCCGTGGCGCACGCGAAATGAGAGGA
GGGGCGCGCG
ACCCGATGTAATGGGTGGCCTGGAGGCGCCTGGTAACAAACATGGGGNGA
ACTANAGAATTACTGCGGAGGGCCTTCCCTGCAGGAACAAAGTATCTGTA
GATAAAAAGACTGCCTGTTAAATGGATTCAGTTTCCTTCCCTGGCTGACT
AGACTATAACAGCTTCAACAAACTCTGAAAATTGTACTCTAGGAACCGCT
TGAGTCAGTTTCAGTGTTATAATGTCTGTGCTTGTCACAGCTGGACATTT
CAAAGCTACTCCTGCTGATTCGATATAAATACTGTACATAATATTAATGC
ATTCTACTTTTTTTTCAAGCTCCTGCAATGGACCTGTAGCTGCTAAATGA
CAGTTCAGTGAGCTATGTGTCTAGAATATTTCAAACTCAGGGCTCTGGTC
ACCTGAATTCCATTATGTTGACTGTATAAGAATATGTGTCTAGATCCTCA
TTTTTTCCATAAAGTTTCTAAATAATACCTTCTACTAAATGAAAATAATT
AACATTTGCAGTCTAACTATTAATTCTCTGACAGTTTTTACTCTCATACA
ATGGATTATTCGATCCAAAAGTGGACAGTTTAGAAGTTGATGCGCGCATA
TATGTATTTTCTGCATTCTGATAAGCATCTTTAGAGAAGGCACCCACAGT
TTTCATAGTCATGAATAAATGAATTATTACTAAATTAAGAAGACAATTAC
TAGTATATAGACTTCATGTTTAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_m10.g1 MSMg01no510_m10.g1 CHROMAT_FILE:
MSMg01no510_m10.g1 PHD_FILE: MSMg01no510_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:26 2005
         (355 letters)



>mm_chr4_51468342_51469098
          Length = 757

 Score =  576 bits (298), Expect = e-169
 Identities = 342/362 (94%), Gaps = 12/362 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccctgcaggaacaaa-gtatctgtagataaaaagact-gcctgttaaatggattcagt 58
           ||||||||||||||||| |||||||||||||||||| |  ||||||||||||||||||||
Sbjct: 201 ttccctgcaggaacaaaagtatctgtagataaaaaggcaagcctgttaaatggattcagt 260

                                                                       
Query: 59  ttccttccctggctgactagactataacagcttcaacaaactctgaaaattgtactctag 118
           ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccttccctggctgaccagagtataacagcttcaacaaactctgaaaattgtactctag 320

                                                                       
Query: 119 gaaccgcttgagtcagtttcagtgttataatgtctgtgcttgtcacagctggacatttca 178
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gaaccgcttgagtcagtttcagtgttataatgtctgtgcttgtcacggctggacatttca 380

                                                                       
Query: 179 aagctactcctgctgattcgatataaatactgtacataatattaatgcattctacttttt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 381 aagctactcctgctgattcgatataaatactgtacataatattaatgcattctacttt-- 438

                                                                       
Query: 239 tttc-----aagctcctgcaatggacctgtagctgctaaatgacagttcagtgagctatg 293
              |     ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 439 ---ccaaacaagctcctgcaatggacttgtagctgctaaatgacagttcagtgagctatg 495

                                                                       
Query: 294 tgtctagaatatttcaaactcagggctctggtcacctgaattccattatgttgactgtat 353
           ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 496 tgtctagaatatttcaaactcagagctctggtcagctgaattccattatgttgactgtat 555

             
Query: 354 aa 355
           ||
Sbjct: 556 aa 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 757
Length adjustment: 9
Effective length of query: 346
Effective length of database: 748
Effective search space:   258808
Effective search space used:   258808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)