BAC Information

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BAC

Clone NameMSMg01-510P10
Chromosome4 (Build37)
Map Location 49,215,045 - 49,215,410
singlet/doubletsinglet
Overlap geneE130309F12Rik
Upstream geneTxndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream geneLOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510P10.T7 (MSMg01no510_p10.b1)MSMg01-510P10.TJ (MSMg01no510_p10.g1)
ACCAG584275AG584276
length742691
length of high quality
(start - end)
323 (329 - 651)360 (292 - 651)
definitionCHROMAT_FILE: MSMg01no510_p10.b1 PHD_FILE: MSMg01no510_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:41 2005CHROMAT_FILE: MSMg01no510_p10.g1 PHD_FILE: MSMg01no510_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCATATTTTGCGGCCGCTAAANGANNNACCANATTCGATATCATGCG
NGGAANNNCNNCTTTTTGCACAAAAACCAGCATCNTGAGATATGCTTTTA
AATCCAGGTCTACCTTTTCATGTGTGTCAGGGTGTCCTGGATTGGGCGAA
GTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGT
AGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTG
TTATTTTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCT
CTATCAGCAGGCGTGGGATATTAGTCNCTTCTCTGAGTTTCAGTGGTCAG
AGCAGTCTCTGTAGGCTAGCTCTCCTCTCTCAGGGAAGGTGTACAGTTAT
CTGGTGTTTGGACCTCCTCCCGCCTGAAGGTGAAGGCCCAAAACAGGATC
TTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTGGA
GTCGAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCTTGCCGGGAAGGTG
GCTGGTTGTCTGGAGCTGAGGATGGTGCCGCCCCAGAATCTCTGCGACTC
TCTCGCCCGTCCCAGAAACAGCTGGCACTCTGTATTCCACACGGTCACCC
GTGCTTTCTGCCCTCCGCGGAGTCCCGGAGCCAAGAAGGCTCCCGCCGGC
GCCTGTGCCACAAACCTCTCAGGTCAGGCAGACCCCCGTGCN
CACATGAATGGTAGCCGGGGCGCTGTTTCGACAGGGGGAACTATNAATTT
CAAAAAGGGAGCTCAGAAAATGCTGGATGCTTCCTCCCCCTCTGGACGAG
AAAGTTAACTTTCTTTCACCATCAAACAACTATCTCTCTAACAAATCTCT
TCCCACATTTGTCAAACTAGGCTGCATTATTATTATATGAGCCCAAAGAC
ATTTTGCATTTTTAATTTCTTTCTCATGAAAATAAAAATATGTTTTATAT
TTGATATGGAATAAACCCGAATAGTTTATTTATTAAATTTCTCTTGGTGA
TCAGAGGGTCTCAGATGATGCCTCATTGGAATGGCTGTTGATGCTGCTGG
GGTTTTATTGGAGTCTAATGGCAACCTGGACTTTGTTCTTCCCCCAGAGA
AACTGCATTTGCCTTTCATAAGACAGTATGGCTGTCCTTCCTCCATTCAC
TGAAGCGGATCAGAAGAGATATGATAAGACACTGGACTTAATACAACTCT
GAACTTATAGCATCCCAGGCTTCAGTAAAAAACCATAATCAACAGATAAG
AATGCCATCATGAAGTATTATTTAAGATTGCCTTTTTAAAAGAATATGGA
AAATACCTTTGAAATTTTGTTAGCAATTGGATTAACTCTGGATTATTTTT
CATAGTCTAGAAAATTTGGTGGGTTTTGTTGTTTGCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_p10.g1 MSMg01no510_p10.g1 CHROMAT_FILE:
MSMg01no510_p10.g1 PHD_FILE: MSMg01no510_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:41 2005
         (360 letters)



>mm_chr4_49214845_49215610
          Length = 766

 Score =  561 bits (290), Expect = e-164
 Identities = 347/366 (94%), Gaps = 6/366 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttggtgatcagagggtctcagatgatgcctcattggaa-tggctgttgatgctgctgg 59
           ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 201 tcttggtgatcagagggtctcagatgatgcctcgttggaagtggctgttgatgctgctgg 260

                                                                       
Query: 60  ggttttattggagtctaatggcaa-cctggactttgttcttcccccagagaaactgcatt 118
           | ||||| ||||||||||||| || ||||||||||||||| |||||||||||||||  ||
Sbjct: 261 gcttttactggagtctaatgggaagcctggactttgttctgcccccagagaaactgtgtt 320

                                                                       
Query: 119 tgcctttcataagacagtatggctgtccttcctccattcactgaagc-ggatcagaagag 177
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tgcctttcataagacagtatggctgtccttcctccattcactgaagcaggatcagaagag 380

                                                                       
Query: 178 atatgataagacactggacttaatacaactctgaac-ttatagcatcccaggcttcagta 236
           |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 381 atatgataagacactggacttaatacaactctgaaccttataacatcccagacttcagta 440

                                                                       
Query: 237 aaaaa-ccataatcaacagataagaatgccatcatgaagtattatttaagattgcctttt 295
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaaaccacaatcaacagataagaatgccatcatgaagtattatttaagattgcctttt 500

                                                                       
Query: 296 taaaa-gaatatggaaaatacctttgaaattttgttagcaattggattaactctggatta 354
           ||||| ||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 taaaaagaaaatagaaaatacctttgaaatgttgttagcaattggattaactctggatta 560

                 
Query: 355 tttttc 360
           ||||||
Sbjct: 561 tttttc 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 766
Length adjustment: 9
Effective length of query: 351
Effective length of database: 757
Effective search space:   265707
Effective search space used:   265707
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)