BAC Information

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BAC

Clone NameMSMg01-510P15
Chromosome4 (Build37)
Map Location 129,997,095 - 129,997,333
singlet/doubletsinglet
Overlap geneZcchc17
Upstream geneRbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3
Downstream geneWdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510P15.T7 (MSMg01no510_p15.b1)MSMg01-510P15.TJ (MSMg01no510_p15.g1)
ACCAG584285AG584286
length740741
length of high quality
(start - end)
241 (83 - 323)240 (121 - 360)
definitionCHROMAT_FILE: MSMg01no510_p15.b1 PHD_FILE: MSMg01no510_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:42 2005CHROMAT_FILE: MSMg01no510_p15.g1 PHD_FILE: MSMg01no510_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGACTTATAATTTGCGGCCGCGAAACGAANCACTANATGCCGTATCAGGC
GNGGNAANCCAGGACATTTCTGAAAAAGCGGGGAGAAAGAACCCGGGCTT
GGGGAGAGGTGTTAGTTTGAGTTGCTGTCTATGAAGATGAGAAGGAGACG
TGGACGAGGTTGAGTCTGTGAGAAGGGATGGGCAAGGAGTTGAGGTGCCT
GTTACACACCCTAAGGAGACTGTGGGATAGACATTTGATTCACATTAGGG
TACAGGTGAGAAGCTAAAGTAAAAGACAGAAATGTGGACGTCATCCGTGT
ATCAATTCACTTGGCGTCCCATATTTTATTTGAAGGTAAGTTAGTAGGGG
CGGGGCGTGTGAGGCTGGATGGGGAGTGCCTATCTTGGCTGATAGATGGA
GGAAGTGAGATCTAAGAACTGGCCATTAGAGGGTGCACCAGTAATCACAG
CGGAACTGCGAGGCTGGCTTCAAGTGTGAGGCTAGCCTGAGCTACATCTT
GAGTGCCAGGCTAGCCAGGGCAAATTGTGAGACTGTTTGATAAAACAAAA
GCAGAGCTAAGCCCTGTGGGATACTCTCACACAAGGTAGAGAAGCCATGT
GCTTCTTGTTTGCCTCTGTCCGAGGGTTGGGCTGTCAGCTCATTTACCTT
CCCAGGACTGCCCTGCCTAAGAAGGGACAGAGCCTCACCAGGCTCTCAAG
CCCACAGCATCATGTGATAAGCTGCCAAACTGAAACCAAC
NAACGATGCAGAGGGAGGCCGGGGGNCGCCCGGTTTCATACCGGGGNGAA
NNANAGAAGTTCCGAAAAAAGGGGAGAGAGANGCCCGCCTCTGCANCTGC
ACCATCTCAAGGGTTGCCCGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGACAG
AGAGACAGAGAGACAGAGAGACAGAGAGACAGAGAGAGACAGTGACAGAT
GGAGGGAGGCAAGGAGGGGGAGAGGACAGGGAGAAGAGAGGGAGGGACAG
GGAAGAGAGGGACATGTTGTGTTAGAGAGAATCTTGAGATGGGGCGTTAT
TTTAGATTGCCTTGCTACGCCTAACATAATCATAAGAGGCCCTTCAAGAA
GAAGACTGGGGCTGGTCACCCCGCTCAGTGGGTAAGAGCACCCGACTGCT
CTTCCGAAGGTCCAGAGCTCAAATCCCAGCAACCACATGGTGGCTCACAA
CCATCCATAACGAGATCTGACTCCCTCTTCTGGAGCGCCTGAAGACAGCT
ACAACGTACTTACATGTAACAAATAAATAACTCCCACAAAAAAAAGAAGA
AGAACACCGACAGCAGGACCGGGCACGCCTTGCTGACGGGAAGCACTTGA
TCGTAGAGATCCCGGGGAAAGCAGCTGATCCCCCCCGGAGTCCGACAGAC
GGAAGCCTTCCCAGCTAACACCGGTTTCAGAACACTGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_p15.b1 MSMg01no510_p15.b1 CHROMAT_FILE:
MSMg01no510_p15.b1 PHD_FILE: MSMg01no510_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:42 2005
         (241 letters)



>mm_chr4_129997027_129997667
          Length = 641

 Score =  424 bits (219), Expect = e-123
 Identities = 234/239 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagaaagaacccgggcttggggagaggtgttagtttgagttgctgtctatgaagatgaga 60
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gagaaagaaccctgtcttggggagaggtgttagtttgagttgctgtctatgaagatgaga 248

                                                                       
Query: 61  aggagacgtggacgaggttgagtctgtgagaagggatgggcaaggagttgaggtgcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aggagacgtggacgaggttgagtctgtgagaagggatgggcaaggagttgaggtgcctgt 188

                                                                       
Query: 121 tacacaccctaaggagactgtgggatagacatttgattcacattagggtacaggtgagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 187 tacacaccctaaggagactgtgggatagacatttgattcacattagggttcaggggagaa 128

                                                                      
Query: 181 gctaaagtaaaagacagaaatgtggacgtcatccgtgtatcaattcacttggcgtccca 239
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 127 gctaaagtaaaagacagaaatgtagacgtcatccgtgtatcaattcacttggcgtccca 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)