Query= MSMg01no511_b14.b1 MSMg01no511_b14.b1 CHROMAT_FILE:
MSMg01no511_b14.b1 PHD_FILE: MSMg01no511_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:51 2005
(558 letters)
>mm_chr4_127690511_127691469
Length = 959
Score = 980 bits (507), Expect = 0.0
Identities = 546/559 (97%), Gaps = 1/559 (0%)
Strand = Plus / Minus
Query: 1 ctggacttgaactcacagagatcagcctgcctctgcctcctgagtgctgcaattaaaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 ctggacttgaactcacagagatcagcctgcctctgcctcctgagtgctgcaattaaaggc 772
Query: 61 tgccaccactacttacccaccactctatgcatttaagcccatacagtctgacctgtttat 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tgccaccactacttacccgccactctatgcatttaagcccatacagtctgacctgtttat 712
Query: 121 cagcataaatgcacacactcactggggtaacatatctgtactacagccaggttaaaatca 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 711 cagcataaatgcacacactcactggggtaacacatctgtactacagccaggttaaaatca 652
Query: 181 gacgcacatactcagttcttttgttgtgttgttgggagtagccagaaagtaggacaggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gacgcacatactcagttcttttgttgtgttgttgggagtagccagaaagtaggacaggcc 592
Query: 241 tgaatgatatagaacagatttactaattaacagctatttctgaatattatgcagccactt 300
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 591 tgaatgatatagaacagatttactaattaacagctatttctgaatattatacagccacct 532
Query: 301 agaggggagagatcagtttatatctgcctacccagacagatgtgtaaggaacattgctaa 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 531 agaggggagagatcagtttatatctgcctaccctgacagatgtgtaaggaacattgctaa 472
Query: 361 atggaacaacaatgcaccttacagaggggtcctctcaatattccacaatgactctaattt 420
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 471 atggaacaacaatgcaccttacagaggggtcctctcgatattccacaatgactctatttt 412
Query: 421 gttttatgattctattttcttatacatttaaatttttctagaatatttcagagatacttt 480
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 411 gttttatgattctattttcttatacatttaaaattttctagaatatttcagagacacttt 352
Query: 481 taataatcacagcgaggggctgggggcgagtttcttttttttttttta-ccatctgctct 539
||||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||||||
Sbjct: 351 taataatcagagcgaggggctgggggcgattttctttctttttttttaaccatctgctct 292
Query: 540 tctatgctgtctggatttt 558
|||||||||||||||||||
Sbjct: 291 tctatgctgtctggatttt 273
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 959
Length adjustment: 10
Effective length of query: 548
Effective length of database: 949
Effective search space: 520052
Effective search space used: 520052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_b14.g1 MSMg01no511_b14.g1 CHROMAT_FILE:
MSMg01no511_b14.g1 PHD_FILE: MSMg01no511_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:51 2005
(458 letters)
>mm_chr4_127532568_127533425
Length = 858
Score = 862 bits (446), Expect = 0.0
Identities = 455/458 (99%)
Strand = Plus / Plus
Query: 1 tcacgcagggcttggtggctgtcgcagctgctgttcgctaataaagaaactgagtcaaat 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacacagggcttggtggctgtcgcagctgctgttcgctaataaagaaactgagtcaaat 260
Query: 61 gtaggagaaggagagtggcattaaggaagcagaagagctgaggtgtgagcccagaggatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaggagaaggagagtggcattaaggaagcagaagagctgaggtgtgagcccagaggatc 320
Query: 121 aatcctagcagatgactccaacccagcagcaacagattctttggatgggtttgctggaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcctagcagatgactccaacccagcagcaacagattctttggatgggtttgctggaag 380
Query: 181 catcattgggcgccatgacagttgccctttttactaatgccagggaccattccttgtgca 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcattgggcaccatgacagttgccctttttactaatgccagggaccattccttgtgca 440
Query: 241 gatggtaacctgcatccatgtccccatagggacagctgttggctcagataaggtggtttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatggtaacctgcatccatgtccccatagggacagctgttggctcagataaggtggtttg 500
Query: 301 aataatgacagagaacttgggatggagtcacagttacctaccactgagctaactgcttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataatgacagagaacttgggatggagtcacagttacctaccactgagctaactgcttca 560
Query: 361 ccttaatgtcaaacacaactgactcatctacagatgaaatagagacatgacacagacaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttaatgtcaaacacaactgactcatctacagatgaaatagagacatgacacagacaag 620
Query: 421 taattactcatcagcacacagcaaggcagtggcagatg 458
||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 taattgctcatcagcacacagcaaggcagtggcagatg 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
