CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNGNGGA
ATTCTGTACTTTCTGGCTGGATCTCCTTGTGCCCCTAGGATACTCACCTG
AGAACATTGTAATGCACTCTATCCTATTTTATTAGTTTGCAGTGGTGTTC
CAGTGCTGCTGTGACTTAGATTCATAGCCTAGGTTCTGACCACGGGTCTA
GCTGTTCTGACCACTGATCTAGCTGTTACTGCTTTAGTTCTCAACAATTA
GACCGTTGCCATTTTTTTTCCTCCAAATATTCTAAAGCAGGACCTGAATG
GATAACTGTAATACTCCTAGACCAGTGGTTCTCAACCTTCCTAATGCTGG
GGCCCTTTATACAGTCCCTCATGTCGTGGTAACCCCCGACCATAAACTTA
TTTTTGTTGCTTCCTCATTACTGTAATCTTTCTGCTGTTATGAATCATAA
TGTAAATATCTGTGTTTTACAATGGTCTTAAATGACTCCTGTGAAAAAGT
CATTCAACCCCTCCCTCAAGGGGTCGTGACCCACAGGTTGAGAAACGTAG
TACTAGACTATATTAGATTGCATTCGTGTCATCAAATATGTACAGCAAGG
TATCTCCAAGTTTAGGACATTGTAAAAAATAAATTAACTATCCAACCAGT
ACTGGAATTATAGGTGCTCACTACTGCACCCAGGGTTTTTTTTGGGGGCG
GGGGGGGTTGG

AATGCAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGCTGGACTCCTTTGTCTATGTTTA
ACAAGAATTATTAACAGGTCACGAGACTATCCTACTGAAGAGATTGTCGG
GGGCAGGGAGCTTGAGGCTTCCCTCAGAGGTAGGTAGGTGTGGCCATAGG
CCAGCTTATGGGATTTGAAAGTAATGTATACCATTTGTCCTAACCTAAAA
GAAAATGGTCAGCTCTTCCTTTCTTTGTTCGTGGTGGATAGAATACAGAG
TCACTGGCAGGAGTGCCTTCATCAAGCTGGTGGTGGTGGTGCACGTCTTT
AATCCCAGCATCCAGGAGGCAGAGGCAGGTGGATATCTTTGAGTTCAAGG
CCAGCCAGGCCTACAGAGTGAGTTCCTGGACTGCCAAGGCTACAACACAG
AGAAGCCTTGTCTTAAAAACCAAACCAAAACACACCCAAAACCAACCAAA
CAAAAAACTTGCAGAGCCTCATAAAAGTCTCTAGGTGTCTTAGATAATCA
CGGGGCTGTCATTTCCTCTATGAGCCACCTGAGGAACAAACTCCTGTCTC
CTAAAAAACACACCTCTTTTAAGGAAAAAACAGAGCCTGGGAAACACACG
GTATGTGAATTTTAATGTTAATATTCTCCATGTTTCCACTCTGTTGCTAC
AGGCATGCATGTGTGTTCAAA

Query= MSMg01no511_h02.b1 MSMg01no511_h02.b1 CHROMAT_FILE:
MSMg01no511_h02.b1 PHD_FILE: MSMg01no511_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:19 2005
         (556 letters)



>mm_chr4_104785187_104786142
          Length = 956

 Score = 1021 bits (528), Expect = 0.0
 Identities = 549/556 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattctgtactttctggctggatctccttgtgcccctaggatactcacctgagaacatt 60
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattctgtactaaatggctggatctccttgtgcccctaggatactcacctgagaacatt 260

                                                                       
Query: 61  gtaatgcactctatcctattttattagtttgcagtggtgttccagtgctgctgtgactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaatgcactctatcctattttattagtttgcagtggtgttccagtgctgctgtgactta 320

                                                                       
Query: 121 gattcatagcctaggttctgaccacgggtctagctgttctgaccactgatctagctgtta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 gattcatagcctaggttctgaccacgggtctagctgttctgaccactgatttagctgtta 380

                                                                       
Query: 181 ctgctttagttctcaacaattagaccgttgccattttttttcctccaaatattctaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgctttagttctcaacaattagaccgttgccattttttttcctccaaatattctaaagc 440

                                                                       
Query: 241 aggacctgaatggataactgtaatactcctagaccagtggttctcaaccttcctaatgct 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggacctgaatggataactggaatactcctagaccagtggttctcaaccttcctaatgct 500

                                                                       
Query: 301 ggggccctttatacagtccctcatgtcgtggtaacccccgaccataaacttatttttgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggggccctttatacagtccctcatgtcgtggtaacccccgaccataaacttatttttgtt 560

                                                                       
Query: 361 gcttcctcattactgtaatctttctgctgttatgaatcataatgtaaatatctgtgtttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttcctcattactgtaatctttctgctgttatgaatcataatgtaaatatctgtgtttt 620

                                                                       
Query: 421 acaatggtcttaaatgactcctgtgaaaaagtcattcaacccctccctcaaggggtcgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaatggtcttaaatgactcctgtgaaaaagtcattcaacccctccctcaaggggtcgtg 680

                                                                       
Query: 481 acccacaggttgagaaacgtagtactagactatattagattgcattcgtgtcatcaaata 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acccacaggttgagaaacgtaatactagactatattagattgcattcgtgtcatcaaata 740

                           
Query: 541 tgtacagcaaggtatc 556
           | ||||||||||||||
Sbjct: 741 tatacagcaaggtatc 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no511_h02.g1 MSMg01no511_h02.g1 CHROMAT_FILE:
MSMg01no511_h02.g1 PHD_FILE: MSMg01no511_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:19 2005
         (402 letters)



>mm_chr4_104923345_104924146
          Length = 802

 Score =  754 bits (390), Expect = 0.0
 Identities = 399/402 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgctggactcctttgtctatgtttaacaagaattattaacaggtcacgagactatccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctgctggactcctttgtctatgtttaacaagaattattaacaggtcacgagactatccta 395

                                                                       
Query: 61  ctgaagagattgtcgggggcagggagcttgaggcttccctcagaggtaggtaggtgtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctgaagagattgtcgggggcagggagcttgaggcttccctcagaggtaggtaggtgtggc 335

                                                                       
Query: 121 cataggccagcttatgggatttgaaagtaatgtataccatttgtcctaacctaaaagaaa 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 334 cataggccagcttatgggatttgaaagtaatgtataccacttgtcctaacctaaaagaaa 275

                                                                       
Query: 181 atggtcagctcttcctttctttgttcgtggtggatagaatacagagtcactggcaggagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atggtcagctcttcctttctttgttcgtggtggatagaatacagagtcactggcaggagt 215

                                                                       
Query: 241 gccttcatcaagctggtggtggtggtgcacgtctttaatcccagcatccaggaggcagag 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gccttcagcaagctggtggtggtggtgcacgtctttaatcccagcatccaggaggcagag 155

                                                                       
Query: 301 gcaggtggatatctttgagttcaaggccagccaggcctacagagtgagttcctggactgc 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 154 gcaggtggatatctttgagttcaaggccagccaggtctacagagtgagttcctggactgc 95

                                                     
Query: 361 caaggctacaacacagagaagccttgtcttaaaaaccaaacc 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  caaggctacaacacagagaagccttgtcttaaaaaccaaacc 53


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)