BAC Information

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BAC

Clone NameMSMg01-511J09
Chromosome4 (Build37)
Map Location 145,214,020 - 145,214,580
singlet/doubletsinglet
Overlap geneOTTMUSG00000010965
Upstream geneGm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701
Downstream geneLOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511J09.T7 (MSMg01no511_j09.b1)MSMg01-511J09.TJ (MSMg01no511_j09.g1)
ACCAG584747AG584748
length728732
length of high quality
(start - end)
631 (45 - 675)559 (77 - 635)
definitionCHROMAT_FILE: MSMg01no511_j09.b1 PHD_FILE: MSMg01no511_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:29 2005CHROMAT_FILE: MSMg01no511_j09.g1 PHD_FILE: MSMg01no511_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:30 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTCCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCTGATTGTTTCAGGTGGGGTGGAGCTAGATGAGATCCAAAGATGC
AAGGATAGGAGTTTTGTTTTTTAGCCCTTGCCCTAAGAAGAAGCTAGTTG
TAGTAAGAGAAGCTGTTGTAAGGGGAGTTTTATAAGAAAAGCTGCAAGAA
GGAGAACAAGTAAAGAAGCTGTTGTGTGAACCCAACTTGGTATCCGTGTC
CATGTCGTTCGTGTCTCCGTGGGCGCAAAGGACAGCAGCACTTTTCTACT
TTATAAAAAGAAGTAATTAAGATACCTTTTTTGATGCAGATGAGGTTGAA
GGATAATTGTTTTCTAAAAGTGTTATGGAGATGTGTCTGAAGATACGAAT
TGCTGCTCTTACACTGACCAAAAAGAATGTAGATCATAGAAAATAAGCCC
TTTAGATAACATTCTACATATAGAGATTAAAACTTTTGGATGACTTGAAT
AAAAAGAGATTTTTAAAAAAAGAAATGTGGAAAGGACACTGACCTGTGGT
GTATTTACCAGACACACACTCATTCTTGTTGTTGTCCTTCTCCCAGGGTC
TCTGTGAAGAACAAAGATTGAATTCTTCATGAAATTTCACATCAAGGTCT
AAATAATTCAAAGATGAAATAAATACAACACCCTTACAGAAAATGCTTAA
CCACATTATATACCTAAAATAAAATTAA
TCTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACAGGAGAGAGACCTTACAAAT
GTAGTGAATGTGACAAATGCTTTACCCAAAAATCCTATCTTAATATTCAT
CAGAGAATTCATGCAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAA
ATGCTTTACTACAAAAGGCAATCTGATAATTCATCAGAGAATTCATACAA
GAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACCCAGAAA
TCCCAACTTAGTATTCATCAGAAAATTCATACAGGAGAGAAACCTTACAA
ATAGATTGTATGTGACAAATACAATACTCACAATGTCAGTCTTAGAAATC
ATCAGTTATTTCATACAGTAGAGAATCTTTATAAATGAAGTAAATGAGGC
AATCCTTTACCAAGATATATCATCTCAAAATTCATTAGAGAATACTTAGA
GAAGACAAACTTTTCAAATATATTTTAGGTATGAATCCTTTCCTTTTGGC
CTAGTTCCTAGACTGTAACAGTGAATACTTACAGGGTAGAAACTTAACTC
ATGCATTGTATGAAGAAATAGCTTTGACTTCATTTCAGGTCAGAGAGAAC
ATCTAAGAACTTTTTATGGTAAAGTATTTCTGTTGGGGAAAATGTTGTAT
TCTTGTACACACTTGAGGCTCCCACTAGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_j09.g1 MSMg01no511_j09.g1 CHROMAT_FILE:
MSMg01no511_j09.g1 PHD_FILE: MSMg01no511_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:30 2005
         (559 letters)



>mm_chr4_145213820_145214780
          Length = 961

 Score =  779 bits (403), Expect = 0.0
 Identities = 525/567 (92%), Gaps = 14/567 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacaggagagaga-ccttacaaatgtagtgaatgtgacaaatgctttacccaaaaatcc 59
           |||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 atacaggagaga-acccttacaaatgcagtgaatgtgacaaatgctttacccaaaaatcc 259

                                                                       
Query: 60  tatcttaatattcatcagagaattcatgcaggagagaaaccttacaaatgcagtgaatgt 119
            |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 260 aatcttaatattcatcagagaattcatacaggagagaaaccttataaatgcagtgaatgt 319

                                                                       
Query: 120 gacaaatgctttact-acaaaaggcaatctgataattcatcagagaattcatacaagaga 178
           ||||||||||||| | | ||||||||  |||| |||||||||||||||||||||| ||||
Sbjct: 320 gacaaatgctttaatga-aaaaggcagcctgagaattcatcagagaattcatacaggaga 378

                                                                       
Query: 179 gaaaccttacaaatgtagtgaatgtgacaaatgctttacccagaaa-tcccaacttagta 237
           ||| ||||||||||| ||||||||||||||||||||||||| |||| | ||| |||||||
Sbjct: 379 gaatccttacaaatgcagtgaatgtgacaaatgctttaccc-gaaaattccatcttagta 437

                                                                       
Query: 238 ttcatcagaaaattcatacaggagagaaaccttacaaatagattgta--tgtgacaaata 295
           ||||||||||||| ||||||||||||||||||||||||||| || ||  |||||||||||
Sbjct: 438 ttcatcagaaaatccatacaggagagaaaccttacaaatag-tt-tacatgtgacaaata 495

                                                                       
Query: 296 caatactca-caatgtcagtcttagaaatcatcagttatttcatacagtagagaatcttt 354
           ||||||||| || ||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 496 caatactcatca-tgtcagtctgagaaatcatcagttacttcatacagtagagaatcttt 554

                                                                       
Query: 355 ataaatgaagtaaatgaggcaatcctttaccaagatatatcatctcaaaattcattagag 414
           ||||||||||| || ||| |||||||||||||| ||||||||||| | ||||||||||||
Sbjct: 555 ataaatgaagtgaacgagacaatcctttaccaaaatatatcatcttataattcattagag 614

                                                                       
Query: 415 aatacttagagaagacaaacttttcaaatatattttaggtatgaatcctttccttttggc 474
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 615 aatacttagagaagacaaacttttcaaatatattgtaggtatgaatcctttccttttggc 674

                                                                       
Query: 475 ctagttcctagactgtaacagtgaata--cttacagggtagaaacttaactcatgcattg 532
           ||| |||||||| | ||||||||||||  |||||||| ||||||||||||||||||||||
Sbjct: 675 ctatttcctagaatataacagtgaatatacttacaggctagaaacttaactcatgcattg 734

                                      
Query: 533 tatgaagaaatagctttgacttcattt 559
           |||||||||||| ||||||||||||||
Sbjct: 735 tatgaagaaatatctttgacttcattt 761



 Score =  302 bits (156), Expect = 5e-86
 Identities = 223/248 (89%), Gaps = 12/248 (4%)
 Strand = Plus / Plus

                                                                       
Query: 53  aaaatcctatcttaatattcatcagagaattcatgcaggagagaaaccttacaaatgcag 112
           ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 1   aaaatccgatcttaatattcatcagagaattcatacaggagagaaaccttacaaatgtag 60

                                                                       
Query: 113 tgaatgtgacaaatgcttta-ctacaaaaggcaatctgataat--tcatcagagaattca 169
           |||||||||||||||||||| | || |||  | ||||  ||||  |||||||||||||||
Sbjct: 61  tgaatgtgacaaatgctttacccac-aaatcccatct--taatagtcatcagagaattca 117

                                                                       
Query: 170 tacaagagagaaaccttacaaatgtagtgaatgtgacaaatgctttacccagaaa-tccc 228
           |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct: 118 tacaggagagaaaccttacaaatgtagtgaatgtgacaaatgctttaccc-gaaaattcc 176

                                                                       
Query: 229 aacttagtattcatcagaaaattcatacaggagagaaaccttacaaat--agattgtatg 286
           | |||||||||||||||| |||||||||||||||||| ||||||||||  ||  || |||
Sbjct: 177 atcttagtattcatcagagaattcatacaggagagaacccttacaaatgcag--tgaatg 234

                   
Query: 287 tgacaaat 294
           ||||||||
Sbjct: 235 tgacaaat 242


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 4
Length of query: 559
Length of database: 961
Length adjustment: 10
Effective length of query: 549
Effective length of database: 951
Effective search space:   522099
Effective search space used:   522099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)