BAC Information

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BAC

Clone NameMSMg01-511O05
Chromosome4 (Build37)
Map Location 15,670,024 - 15,670,263
singlet/doubletsinglet
Overlap geneLOC100040095
Upstream gene1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
Downstream geneLOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511O05.T7 (MSMg01no511_o05.b1)MSMg01-511O05.TJ (MSMg01no511_o05.g1)
ACCAG584977AG584978
length733730
length of high quality
(start - end)
80 (87 - 166)240 (120 - 359)
definitionCHROMAT_FILE: MSMg01no511_o05.b1 PHD_FILE: MSMg01no511_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:52 2005CHROMAT_FILE: MSMg01no511_o05.g1 PHD_FILE: MSMg01no511_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACCATATTACTCAAATATTGAAATTACAGGAGGATCTTTCTCAAACT
GGCTTATTATAGAATCAACACTACTGTAAACTTTCACAGGATGAATCTTG
TACACAACTTTGAATTTTAATGGGCGAATGGCTCTATGGTTTATAACAAC
AAGCACTCCTTGAGTGTCATACAGCTTGCCCTAGCCTGGTAAGGTGTGGA
TGAACAGTTTTCCATTTATACAGTTGAGAGAAACGGATACTTCTGAAACA
TTTCGAAGTCATTTTTCTTTTTCTTTTCACAACCTGAATGGTGCTCCACT
GGATCACCTTTCCCACCCGACAATTAATACATATAAATTCCCCGTACAGA
GTTTTCATGACCTATCACCGCTTTAAACATTTAAGTATGTCTACATATAG
GCATTTTAGTACAAAAGGCGCAGGCAAGTCCCGTAATTGAAGCCCACGAT
GTGCCTGATGAATCCGTGGCTGAGTCATTCATTACCTCTGACCTTTTGTT
TTCTTTGTTGTACCATCCTACCCCCACTATATCCCTATCATTATACCTCC
TGTTAGCGCCCGTGCTTTTTCACTCCTTTCCACCCTTCCTTTTTCCCTTT
TTTTTTTTCCCCTTTTTTTTTTTCATTTTTCCTTTCCTGTCTTTTTCCCT
TCCCCTCCCCCCTTTTTTCCTCCCCCCTTCCCC
ATTGCATTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACATGAAGCCCTCTCTCTTAAAATT
TCAAAACACACTGGGAAGAAGGAAAGGAAATCATGTGTTTAGCCTGTAAG
TGCTCAGTGGGCGGGCTCTTTCCAGGAAACCGAGGATGCAGGATTCTGTA
TGGCTGTCTGAATTTCTGCTTGAAATTATTCATTCTCCTGTCTGGTCTTA
CTAAAGCCATTCACCTTGCTCTTAGTTAAGCATCACCTTTCTTGCGATGC
ATTTTACAGGAACATGGTATGCCATGTTCTTGTGCTCTGATGTCAGCAGA
TAGTTCAGCTTACAGGTCTTACATATCTGCAAGAAGATTATTTAAACACT
CAGCCTCCAGGGTATTCTGTACATGAGGCTTCTTTTCACACTGTGTAGAC
ATGTTATATATTTTCCATCATCAATTCAAAATTGTACTTAAGCCAATATA
ATTATTTTGATTTATTAAACTTGACAAAGATGGATAGGAAGCTAGCCAGT
ATCACTGTGTTCTCAAAAATGCTTACATATCTCCCAAAATAATATAGATA
TTCCACGAACATGTTTTGGGCCTACTAAAATTTACATATGTAGTACAATA
TACTCCATTTTCTCTTCTGATTATTGAACTGGAGTATTAAACATCTTATA
CTCCTGAACGCCAATTTGGCGTATTCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_o05.g1 MSMg01no511_o05.g1 CHROMAT_FILE:
MSMg01no511_o05.g1 PHD_FILE: MSMg01no511_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:52 2005
         (240 letters)



>mm_chr4_15669824_15670463
          Length = 640

 Score =  426 bits (220), Expect = e-124
 Identities = 235/240 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaaaggaaatcatgtgtttagcctgtaagtgctcagtgggcgggctctttccaggaaa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 aggaaaggaaatcatgtgtttagcctgtaagtgctcagtgggtgggctctttccaggaaa 381

                                                                       
Query: 61  ccgaggatgcaggattctgtatggctgtctgaatttctgcttgaaattattcattctcct 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccgaggatgcaggattctgtaaggctgtctgaatttctgcttgaaattattcattctcct 321

                                                                       
Query: 121 gtctggtcttactaaagccattcaccttgctcttagttaagcatcacctttcttgcgatg 180
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtctggtcagactaaagccattcaccttgctcttagttaagcatcacctttcttgcgatg 261

                                                                       
Query: 181 cattttacaggaacatggtatgccatgttcttgtgctctgatgtcagcagatagttcagc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 260 cattttacaggaacatggtatgccatgttcttgtgctctgatgtcagcagatggttcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)