Query= MSMg01no511_p22.b1 MSMg01no511_p22.b1 CHROMAT_FILE:
MSMg01no511_p22.b1 PHD_FILE: MSMg01no511_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:00 2005
(493 letters)
>mm_chr4_99849257_99850150
Length = 894
Score = 928 bits (480), Expect = 0.0
Identities = 489/492 (99%), Gaps = 1/492 (0%)
Strand = Plus / Plus
Query: 1 cacccagcctttcttggccttcttatccattatcagttatgtgtgtgttctggaaggcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacccagcctttcttggccttcttatccattatcagttatgtgtgtgttctggaaggcaa 260
Query: 61 tctgattttatcattggcttaggaggaaggcaagcctactgccaaaggatgcttctattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgattttatcattggcttaggaggaaggcaagcctactgccaaaggatgcttctattt 320
Query: 121 tcctgtatatagcaaggtgcaaatgatagtaagtcactgagtgcttgtcttcctggtgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctgtatatagcaaggtgcaaatgatagtaagtcactgagtgcttgtcttcctggtgct 380
Query: 181 aaatgtactatattagttgtgatttcttgttcaggtttttttttttt-aaatcatgcaat 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 aaatgtactatattagttgtgatttcttgttcaggtttttttttttttaaatcatgcaat 440
Query: 240 agcaaaaatatgttgtgcttttatgtttccttatttccccaaacttagaaagaggaagtg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaaaaatatgttgtgcttttatgtttccttatttccccaaacttagaaagaggaagtg 500
Query: 300 gtgtgtgtatgtgtgtgtaaatatagggctgagaagtgtctctgtctcagagagtacatt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtgtgtatgtgtgtgtaaatatagggctgagaagtgtctctgtctcagagagtacatt 560
Query: 360 atcaattgtataaggagatttttttttaattgggataacattttctcagagtagcttcct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcaattgtataaggagatttttttttaattgggataacattttctcagagtagcttcct 620
Query: 420 cttttgtttccctaatttaatgggcatacatctattcatctctctctctctctctctctc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 cttttgtttccctaatttaatgggcatacatctattcatctctctctctctctctctttc 680
Query: 480 tctctttctctc 491
||||| ||||||
Sbjct: 681 tctctctctctc 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 894
Length adjustment: 10
Effective length of query: 483
Effective length of database: 884
Effective search space: 426972
Effective search space used: 426972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_p22.g1 MSMg01no511_p22.g1 CHROMAT_FILE:
MSMg01no511_p22.g1 PHD_FILE: MSMg01no511_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:00 2005
(529 letters)
>mm_chr4_100013582_100014510
Length = 929
Score = 808 bits (418), Expect = 0.0
Identities = 418/418 (100%)
Strand = Plus / Minus
Query: 112 ataaaagcagaaaacaaaaccctcaataaatgctagcaaacaaaacagaaggggcagatg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 ataaaagcagaaaacaaaaccctcaataaatgctagcaaacaaaacagaaggggcagatg 870
Query: 172 agatggctcagcagtaaaggtgtgtgattccccaggccccacatggtagagggaggagac 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 agatggctcagcagtaaaggtgtgtgattccccaggccccacatggtagagggaggagac 810
Query: 232 ctattccttcacattgtcctctgacacccatatgtccacctctccaaaagtataattaaa 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ctattccttcacattgtcctctgacacccatatgtccacctctccaaaagtataattaaa 750
Query: 292 agattttaaatatttaaaaagaatgcaggaaaatggaatctagtaactcacataagggac 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 agattttaaatatttaaaaagaatgcaggaaaatggaatctagtaactcacataagggac 690
Query: 352 ttattatatattgcatccacagtattctgtgaatgacagtttgatcaatcaatgacgtac 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ttattatatattgcatccacagtattctgtgaatgacagtttgatcaatcaatgacgtac 630
Query: 412 catgcactaataacagaagaactaaccaaatcccactatcatctcaatggacacaagaag 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 catgcactaataacagaagaactaaccaaatcccactatcatctcaatggacacaagaag 570
Query: 472 ttatctggcaaaggccattatgttcacataatgaaaaccatacatgaaaagaggaata 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttatctggcaaaggccattatgttcacataatgaaaaccatacatgaaaagaggaata 512
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
