XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCTCGGTTT
TCTTCTATACCCCATTTTTATTGGGTTGTTCGTTTTTTTTTTGGTGATTA
ACTTCTTGAGTTCTTTATCTTTTTTGATATTTGCCCTCTATTGGATGTGG
GGTTACTGAAGTTCTTTTCCCAATATGTACGTTGCTGATTTTACTGTGCC
ATTTGCCTTACAGAAGCTTTGCAGTTTCACAAGGTTCCATTTATCAGTTC
TTGATCTTATAGCATGAGACATTGGAGTTCTGTTTAGGAAATCTTCCCTT
GTGCCAATGAATTCGAGGCTCTTTCCCAATTTCTCTTCTCTTAGATTGAG
TGTATCTGGTTTTATGTTGAGCTCCTTGATCCTCTTGGACTTGAGTTTTG
TGCAAGGTGACAAAAATGCTTCTATTTTCATTCTTCTACATACAGGCAGC
TATTAGAATAGCACCATTTATTGAACATACTTTCTTGCTTTCCATTGAAT
ATTTTTGCCCTTTTTGTCAAAGATCAAGTGTCTATAAATATGTGGTTTTA
TTTCTGAGTCTTCAATTCTATCCCATTTATCAACATGTCTGTCTCTGTAC
CTATACCACACAATATTTATCACTATTGCCCTGTAGTAAATTTTGAGGTC
AGAGATGGTGATTCCCCCAGCTGTTCATTTATTGTTAAGAATTATTTTTG
ATAGTTTGTTTTTCTTTTTTCCAGATGAATTTGAGAATTGCTATTTTCAT
GTCTN

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTAAGAACTCATAGGAATACTTTTTGAAATACAAT
AAAAATGTTTTCAAAGTTTAATATAAAGTTACTAGATTGAAAACACATAC
ATTTTAAGTTAACTATAAAGAAAATATTTGATAACATGAAAGATATAAAT
AGTAACCATAAACTGTCTCCTCAATAATGAATATCAGAGTATTGTATAAA
CTTTGCTTCATCGAATGATTGCAAAATTACTATAATTATTATCCAAAATT
CATAGCTAAACAAAAAATGTGAATATTTTAACTAATTTCCTCAGTATTCA
TATTATCTTATAGAATTGATATTAATATAATTTGCTATTAGTATAATATT
TTACAAGAAACTTATTCCATGGGTTTTGCTTCTTTATACAGATTTAAAAT
TTAAACAGGAAATATATGCTATAGTCTTCTATTCTGATGTTAATTTTTAT
GGAAATAATAGATTTATATCCTTGAACCACATAAAATACATTCTAAACCC
CACAATGGTTGCCTAATGCCATAAGTAGATCCAAACCCTATGGACATTAT
GTTTTGTCCTCTAAATATGCACCCATGATAAAGTTTGCTTAGAAGTTTCC
ACAATAAGAGATTAATAATAAATAATAAAATGAGTAATTTGACAGTATAA
TTTTTGTGTCTACCCTCTTTATTCTCTGGTTCCTTCCTTCTGCAAATATC
TTGATTTTATAGGCACTGA

Query= MSMg01no512_i15.g1 MSMg01no512_i15.g1 CHROMAT_FILE:
MSMg01no512_i15.g1 PHD_FILE: MSMg01no512_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:44 2005
         (577 letters)



>mm_chr4_37803360_37804338
          Length = 979

 Score = 1025 bits (530), Expect = 0.0
 Identities = 567/580 (97%), Gaps = 4/580 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaagaactcataggaatactttttgaaatacaataaaaatgttttcaaagtttaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tctaagaactcataggaatactttttgaaatacaataaaaatgttttcaaagtttaatat 614

                                                                       
Query: 61  aaagttactagattgaaaacacatacattttaagttaactataaagaaaatatttgataa 120
           |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 613 aaagttactagattgaaaacacatacattttacgttaactacaaagaaaatatttgataa 554

                                                                       
Query: 121 catgaaagatataaatagtaaccataaactgtctcctcaataatgaatatcagagtattg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 553 catgaaagatataaatagtaaccataaactgtctcctcaataatgaatattagagtattg 494

                                                                       
Query: 181 tataaactttgcttcatcgaatgattgcaaaattactataattattatccaaaattcata 240
           ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 493 tataaactttgcttcatcgaatgattgcaaaattactataattatcattcaaaattcata 434

                                                                       
Query: 241 gctaaacaaaaaatgtgaatattttaactaatttcctcagtattcatattatcttataga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gctaaacaaaaaatgtgaatattttaactaatttcctcagtattcatattatcttataga 374

                                                                       
Query: 301 attgatattaatataatttgctattagtataatattttacaagaaacttattcc-atggg 359
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 373 attgatattaatataatttgctattagtataatattttacaagaaactcattccaat-gg 315

                                                                       
Query: 360 ttttgcttctttatacagatttaaaatttaaacaggaaatatatgctatagtcttctatt 419
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 314 ttttgcttctttatacagatttaaaatttaaacaggaaatatatgctttagtcttctatt 255

                                                                       
Query: 420 ctgat--gttaatttttatggaaataatagatttatatccttgaaccacataaaatacat 477
           |||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 254 ctgatatgttaatttttatggaaataatatatttatatccttgaaccacataaaatacat 195

                                                                       
Query: 478 tctaaaccccacaatggttgcctaatgccataagtagatccaaaccctatggacattatg 537
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tctaaaccccacaatggatgcctaatgccataagtagatccaaaccctatggacattatg 135

                                                   
Query: 538 ttttgtcctctaaatatgcacccatgataaagtttgctta 577
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ttttgtcctctaaatatgcacccatgataaagtttgctta 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 979
Length adjustment: 10
Effective length of query: 567
Effective length of database: 969
Effective search space:   549423
Effective search space used:   549423
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)