Query= MSMg01no512_j16.b1 MSMg01no512_j16.b1 CHROMAT_FILE:
MSMg01no512_j16.b1 PHD_FILE: MSMg01no512_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:49 2005
(509 letters)
>mm_chr4_130732313_130733221
Length = 909
Score = 934 bits (483), Expect = 0.0
Identities = 495/499 (99%), Gaps = 1/499 (0%)
Strand = Plus / Minus
Query: 1 aggctatttcatttgtctctttgcacaccccctggactgcttgacagtcccacactgggc 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 659 aggctatttcatttgtctctttgcacatcccctggactgcttgacagtcccacactgggc 600
Query: 61 ctctccaaactctaggtttggctcccagagtcctggggcattcttagcttgctgtacagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctctccaaactctaggtttggctcccagagtcctggggcattcttagcttgctgtacagc 540
Query: 121 ctatgccttggagtcctactaatgagcaccaggtgccaggcctctctgagtgcctcggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ctatgccttggagtcctactaatgagcaccaggtgccaggcctctctgagtgcctcggtc 480
Query: 181 cctggtgtgaccagggtgtccttgggggtttcaaggcaaaccagaagaaaaaagtggtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cctggtgtgaccagggtgtccttgggggtttcaaggcaaaccagaagaaaaaagtggtgg 420
Query: 241 ctcttgctgaactcccagttagccagaatcagccaaccagtgggtcatgggacatctcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ctcttgctgaactcccagttagccagaatcagccaaccagtgggtcatgggacatctcct 360
Query: 301 tttgccctgagcaggggcagggagaaagacaggtatacagctcattagctcctccttatt 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 359 tttgccctgagcaggggcagggagaaagacgggtatacagctcattagctcctccttatt 300
Query: 361 tccagattaggattctccaggaccagaaacagaaaccaggcagccagtaatcacagaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tccagattaggattctccaggaccagaaacagaaaccaggcagccagtaatcacagaagg 240
Query: 421 caaaaggaagaaaaagggaaggaagaggaggatgaagaggaagagaaaagaaaagaaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 caaaaggaagaaaaagggaaggaagaggaggatgaagaggaagagaaaagaaaagaaaag 180
Query: 481 aaaaaaaaaagaaaagaaa 499
|||| |||| |||||||||
Sbjct: 179 aaaagaaaa-gaaaagaaa 162
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_j16.g1 MSMg01no512_j16.g1 CHROMAT_FILE:
MSMg01no512_j16.g1 PHD_FILE: MSMg01no512_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:49 2005
(577 letters)
>mm_chr4_130588020_130588992
Length = 973
Score = 926 bits (479), Expect = 0.0
Identities = 552/579 (95%), Gaps = 8/579 (1%)
Strand = Plus / Plus
Query: 1 cctgagtaagttgggagaaggaaggcttcctccctcttgattaaccccacctcagctgag 60
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 201 cctgagtaagttgggagaaggaaggcttcctccctcctgactaaccccacctcagctgag 260
Query: 61 gctggcatttgctcttttccttgggattcctgtcccaagttggaggtggggcttcagcac 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 261 gctggcatttgctcttttccttgggattcctgtcc-aagttggaggtggggcttcaacac 319
Query: 121 ccccccac--ccaccctctgcctggcttttcccctcagaggccccgggagacactggaca 178
||| || || ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 320 ccc---acttcc--cctctgcctggcttttcccctcagaggccccaggagacactggaca 374
Query: 179 gaggccgggaaccagggcatggatggctccactgtgagttagttcaaagctgcattcgta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttggccgggaaccagggcatggatggctccactgtgagttagttcaaagctgcattcgta 434
Query: 239 tccggaacagacaaaagttgcagcagggtgagggagtcacgtgtcttggaagagctggtt 298
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 435 tccggaacagacaaaagttgcagcagggtgagggagtcatgtgtcttggaagagctggtt 494
Query: 299 ctgcaggtcatgctggtgtcatgggccctttaagctggtgaaggcactgcctactgcttc 358
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 495 ctgcaggtcatgctgatgccatgggccctttaagctggtgaaggcactgcccactgcttc 554
Query: 359 tatgggaccattatacaccgctcactgcaggttaagtattgccctgttcgggcatgtagt 418
| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 555 tgtgggaccattatacactgctcactgcaggttaagtattgccctgttcgggcacgtagt 614
Query: 419 gtgcctccgtgggccccttaccttctggctcaccctgacttgctcctggatcccagtgct 478
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 615 gtacctccgtgggccccttaccttctggctcaccctgacttgctcctggctcccagtgct 674
Query: 479 acacatttatagattaggaaagaatcctgtgagaggtgggggaggtttagagctttctga 538
|||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 675 acacatttatggattaggaaagaatcctgtggggggtgggggaggtttagagctttctga 734
Query: 539 gcagtggggctgtgtttgcaaggggcactgatgcctgtg 577
||||||||||||||||||||||||||||||| |||||||
Sbjct: 735 gcagtggggctgtgtttgcaaggggcactgacgcctgtg 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 973
Length adjustment: 10
Effective length of query: 567
Effective length of database: 963
Effective search space: 546021
Effective search space used: 546021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
