BAC Information

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BAC

Clone NameMSMg01-512K22
Chromosome4 (Build37)
Map Location 109,868,843 - 109,869,223
singlet/doubletsinglet
Overlap genenone
Upstream geneCalr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2
Downstream geneElavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512K22.T7 (MSMg01no512_k22.b1)MSMg01-512K22.TJ (MSMg01no512_k22.g1)
ACCAG585585AG585586
length769770
length of high quality
(start - end)
548 (32 - 579)569 (69 - 637)
definitionCHROMAT_FILE: MSMg01no512_k22.b1 PHD_FILE: MSMg01no512_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:55 2005CHROMAT_FILE: MSMg01no512_k22.g1 PHD_FILE: MSMg01no512_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCGCTATACGACTCCTATTCGGAGAGGATCCGCGGAATTCATAAGA
ATCCGTAAGTAAATAGTAAGCAAGATTACCCTTCCTAATGTGGATGAACA
CAGCACAATTTGTTGAAAATCCATATTTTATAAAAAGGCAAAAGAAAGAG
AGCTGAGACACTCCATTCTACAAAATATAAATGATACTAGTGCCCACTCT
GAATGAACTTCTGTCTTAGTCAGGGTTTTACTGCTGTGAACAGACACCAT
GACCAAGGCAAGTCTTATAAAAAGCAACATTTAATTGGGGCTGGCTTACA
TGTTCAGAAGTTCAGTCCATTACCATCAAGGTGGAAGCATGTCAGTATCC
AGGCAGGCATGGCGCAGGCAGAGCTGAGAGTTCTATGTCTTCATCCAAAG
GCTGCTAGTGGAAGACTGACTTCCAGGCAACTAGGGTGAGGATCTTATAC
CAATACCCACAGTGACACACCCATTCCAACCAGGTCACACCTATTCCAAC
AAGGCCATACCTTCAGATGGTGCCACTCCCTAGTCCAAGGATATACAAAC
CATCACATTCCACTCCCTGGTCCCCATAGACTTGTTCAAAAACATGAGTC
TATGGGGGCCATACTTAAACATAGCATAATGCAAAATGCATTTATTCCAA
CTTTCAAAGTACTCATAGCCTATAGCAGTCACACAATGTTAAAAGTCCAA
AGTTCAACGGATTGAGAAGAACAATTAATAATGTGGTTATGCGTAAGCAC
TGCTTGCGAGTAGTAATAA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTTCTTGTGGCTGTCTTATTTTAGGTTTGTT
GAAGGATTACTTTCTTGCTTTTTCTAGGGTGCAGTTTCCTTCCTTGTGTT
GGTATTTTCCCTTTATTATCCTTTGAAGGGCTGGATTCGTGGAAAGATAT
TGTGTGAATTTGGTTTTATCATGGAATACTTTGGTTTCTCTATCTATGGT
AATTGAGAGTTTTGCTGGGTATAGTAACCTGGCCTGGCATTTGTGTTCTC
TTAGGGCCTGCATAACATCTTTCCAGGATCTTCTGGCTTTCATAGTCTCT
GGTGAGAAGTCTGGTGTAATTCTAATAGACCTGCCTTTATATGTTACTTG
ACCTTTTCCCCTGACTGCTTTTAATATTCTATCTTTATTTAGTGCATTTG
TTGTTCTGATTATTATGTGTCGGGAGGAATTTCTTTTCTGGCCCAGTCTA
TTTGGAGTTCTGTAGGCTTCTTGTATGTTCATAGGCATCTTTTTCTTTAG
GTCTGGGAAGTTTTCTTTTATAATTTTGTTGAAGATATTTGCTGGCCCTT
TAAGTTGAAAATCTTCATTCTCATCTACTCCTATTATCCTTAGGTTTGGT
CTTCTCATTGTGCCCTGGAATTCCTGGATATTTTGAGTTAGGATCTTTTT
TGCATTTGCATTTTCTTTGATTGGTGTGCCCATGTTCTCTATGAATCTTC
TGCACCTGAAGTTCTCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_k22.b1 MSMg01no512_k22.b1 CHROMAT_FILE:
MSMg01no512_k22.b1 PHD_FILE: MSMg01no512_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:55 2005
         (548 letters)



>mm_chr4_109868843_109869791
          Length = 949

 Score =  659 bits (341), Expect = 0.0
 Identities = 371/381 (97%), Gaps = 1/381 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcataagaatccgtaagtaaatagtaagcaagattacccttcctaatgtggatgaa 67
           ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 381 gaattcataagaatcagtaagtaattagtaagcaagattacccttcctaatgtggataaa 322

                                                                       
Query: 68  cacagcacaatttgttg-aaaatccatattttataaaaaggcaaaagaaagagagctgag 126
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacagcacaatttgttgaaaaatccatattttataaaaaggcaaaagaaagagagctgag 262

                                                                       
Query: 127 acactccattctacaaaatataaatgatactagtgcccactctgaatgaacttctgtctt 186
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 acactccattctacaaaatataaatgatactagtgcccactctgaataaacttctgtctt 202

                                                                       
Query: 187 agtcagggttttactgctgtgaacagacaccatgaccaaggcaagtcttataaaaagcaa 246
           ||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 agttagggttttattgctgtgaacagacaccatgaccaaagcaagtcttataaaaagcaa 142

                                                                       
Query: 247 catttaattggggctggcttacatgttcagaagttcagtccattaccatcaaggtggaag 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 catttaattggggctggcttacatgttcagaagttcagtccattaccatcaaggtggaag 82

                                                                       
Query: 307 catgtcagtatccaggcaggcatggcgcaggcagagctgagagttctatgtcttcatcca 366
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 81  catgtcagtatccaggcaggcatggcacaggcagagctgagagttctatgtcttcatcca 22

                                
Query: 367 aaggctgctagtggaagactg 387
           || ||||||||||||||||||
Sbjct: 21  aaagctgctagtggaagactg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 949
Length adjustment: 10
Effective length of query: 538
Effective length of database: 939
Effective search space:   505182
Effective search space used:   505182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)