Query= MSMg01no512_o10.b1 MSMg01no512_o10.b1 CHROMAT_FILE:
MSMg01no512_o10.b1 PHD_FILE: MSMg01no512_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:13 2005
(691 letters)
>mm_chr4_97657843_97658929
Length = 1087
Score = 1210 bits (626), Expect = 0.0
Identities = 672/690 (97%), Gaps = 8/690 (1%)
Strand = Plus / Plus
Query: 4 ggaattcatcttttcatatcccgatgatgtagtgaacacacacagagacttaaccttgct 63
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaattcatcttttcatatcccgatgatgtagtgaacacacacacagacttaaccttgct 263
Query: 64 aacagattcatgaagtaaggtaacgaaaagggtgacatcatgaaatacttaactcagtca 123
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 264 aacagattcatgaagtaaggtaaaggaaagggtgacatcatgaaatacttaactcagtca 323
Query: 124 caggaatgtacatggcaagataaaaaatgacaccggtagacagtgttcattcgtgcgcac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caggaatgtacatggcaagataaaaaatgacaccggtagacagtgttcattcgtgcgcac 383
Query: 184 gcaccgagcggggatgtgtggtatgtgctgcactgttcaagtgatagaggaggctgagag 243
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 gcaccgagcggggatgtgcggtatgtgctgcactgttaaagtgatagaggaggctgagag 443
Query: 244 agtgacgctttccagtttcttccccattccatccacaatccctgccactgtgtgtgcaag 303
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 444 agtgacgctttccagtttcttccccattccatccacaatccgtgccactgtgtgtgcaag 503
Query: 304 tgcgctcgctcacaactctctttggtagttcaccatgaaatgcccatggtagacattctt 363
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgcgctcgctcacaactctctctggtagttcaccatgaaatgcccatggtagacattctt 563
Query: 364 taaacactcaagcagagcattattaaagttttgttgtctttgaaaatcaatatgcaaaaa 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caaacactcaagcagagcattattaaagttttgttgtctttgaaaatcaatatgcaaaaa 623
Query: 424 caaaataagttttaccatgtctttgtggtcctgtttcgtatgagaatcttaattaaacag 483
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 624 caaaataagttttaccatgtctttgttgtcctgtttcgtatgagaatcttaa----acag 679
Query: 484 ctgggaaagaaaatgggggataaagaaatccatccatgattccttgctt-aaagaaaaaa 542
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 680 ctgggaaagaaaatgggggataaagaaatccatccatgattccttgcttcaaagaaaaaa 739
Query: 543 aagaaaaaagaaaaatgaaaaccggaaacaaaacaaaacaaaataaaaacctttccaact 602
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 740 a-gaaaaaagaaaaatgaaaactggaaacaaaacaaaacaaaataaaaacctttccaact 798
Query: 603 ttcttgatcacacactct--taagccaggaccaggaaacaatttctaatcagtgctgtga 660
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttcttgatcacacactctattaagccaggaccaggaaacaatttctaatcagtgctgtga 858
Query: 661 tctgggcccagatcgtgctggccttttgta 690
||||||||||||||||||||||||||||||
Sbjct: 859 tctgggcccagatcgtgctggccttttgta 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1087
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1077
Effective search space: 733437
Effective search space used: 733437
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_o10.g1 MSMg01no512_o10.g1 CHROMAT_FILE:
MSMg01no512_o10.g1 PHD_FILE: MSMg01no512_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:13 2005
(660 letters)
>mm_chr4_97693106_97694165
Length = 1060
Score = 1261 bits (652), Expect = 0.0
Identities = 658/660 (99%)
Strand = Plus / Minus
Query: 1 aactgtgcttatagctatcaaggcctcgttctgcaaatctggggtcacctgtaaactgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 aactgtgcttatagctatcaaggcctcgttctgcaaatctggggtcacctgtaaactgtc 801
Query: 61 aaaatagtcctccatagatgcttttaaaacacataataatgtatttacctacttactaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aaaatagtcctccatagatgcttttaaaacacataataatgtatttacctacttactaac 741
Query: 121 tttttataagaggaaattcttgagacttttaaaaataaaatcaacttaacctggaaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tttttataagaggaaattcttgagacttttaaaaataaaatcaacttaacctggaaataa 681
Query: 181 gtttatccctgaaagaagtttatctctgatagcattttaaaaataattgcaattaaatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtttatccctgaaagaagtttatctctgatagcattttaaaaataattgcaattaaatgt 621
Query: 241 attacttactcaattttgactccaagtattgcacttaattgtttggagtttacatcactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 attacttactcaattttgactccaagtattgcacttaattgtttggagtttacatcactt 561
Query: 301 tgactggcacaattgcttattaatagttttataatgtatataacatacatataacacaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgactggcacaattgcttattaatagttttataatgtatataacatacatataacacaca 501
Query: 361 cacaatttagtgcattagaattttgaatggtttgctataggagaacattcaaacagttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cacaatttagtgcattagaattttgaatggtttgctataggagaacattcaaacagttca 441
Query: 421 tgttagattgtttgtgtgctttttgatagagtttcatctagcacatgctggtcttggatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgttagattgtttgtgtgctttttgatagagtttcatctagcacatgctggtcttggatt 381
Query: 481 cactgagtagccaagtagaaggatgctcctgacccttctgcttctacctttcaagtggag 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cactgcgtagccaagtagaaggatgctcctgacccttctgcttctacctttcaagtggag 321
Query: 541 gactcacatatgccacggcacatagtgacacaaagttttaagtggctttttaatcctaca 600
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 320 gactcacatatgccacggcacatagtgacataaagttttaagtggctttttaatcctaca 261
Query: 601 tctaaacatagtactaggttccatggataagagttaaagtttcttattagatttccttca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tctaaacatagtactaggttccatggataagagttaaagtttcttattagatttccttca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
