Query= MSMg01no513_b04.b1 MSMg01no513_b04.b1 CHROMAT_FILE:
MSMg01no513_b04.b1 PHD_FILE: MSMg01no513_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:27 2005
(600 letters)
>mm_chr4_131921238_131922237
Length = 1000
Score = 1110 bits (574), Expect = 0.0
Identities = 592/598 (98%), Gaps = 1/598 (0%)
Strand = Plus / Plus
Query: 4 ggaattcatggattacagagaagacccggccttcattctgctcaactcacgctgtagtat 63
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcatggagcacagagaagacccggccttcattctgctcaactcacgctgtagtat 262
Query: 64 gttccgctgctccaattcttctgctgttggtctctgactcagccgcctacaacagagaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gttccgctgctccaattcttctgctgttggtctctgactcagccgcctacaacagagaca 322
Query: 124 aagggtacttactgtccagagtaaatcccaacactgtttttaagaatttttttttttt-g 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 323 aagggtacttactgtccagagtaaatcccaacactgtttttaagaatttttttttttttg 382
Query: 183 gccaagatttatattgatgtgtaacaaataaatctccaaaatttctaacatgtactatgg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gccaagatttatattgatgtgtaacaaataaatctccaaaatttctaacatgtactatgg 442
Query: 243 tgacttctttatttatcgtgaaaccagtctgacattgaaagaactgagaaacacacacta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgacttctttatttatcgtgaaaccagtctgacattgaaagaactgagaaacacacacta 502
Query: 303 ttatgtggaacgtgatggctcacagctgtgaggccagcccctgaggacggaggctcagga 362
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 503 ttatgtggaacgtgatggctcacagctgtgaggccagcccctgagggcggaggctcagga 562
Query: 363 tgacaagatcctgtttcaaacagagaggggtgagtgtggcggcagctggcactgaaaagc 422
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 563 tgacaagatcctgtttcaaacagagaggggcgagtgtggcggcagctggcactgaaaagc 622
Query: 423 acaggctgtttttccagagaacccaggttcagttccaagcacacaaccaactcgctggcc 482
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 623 acaggctgtttttccagagaacccgggttcagttccaagcacacaaccaactcgctggcc 682
Query: 483 cagagggtttcttcctgtacttttctaactatttaatataatgaatgtgtatttattttt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cagagggtttcttcctgtacttttctaactatttaatataatgaatgtgtatttattttt 742
Query: 543 atactatagggagaggaagaaaaaaagacctttgtaaatcataatttgatagaaggtc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atactatagggagaggaagaaaaaaagacctttgtaaatcataatttgatagaaggtc 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_b04.g1 MSMg01no513_b04.g1 CHROMAT_FILE:
MSMg01no513_b04.g1 PHD_FILE: MSMg01no513_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:27 2005
(565 letters)
>mm_chr4_132089904_132090868
Length = 965
Score = 549 bits (284), Expect = e-160
Identities = 296/300 (98%)
Strand = Plus / Minus
Query: 266 aattcctcaaaagtatgtctatgctatgatttgttgacctcttcagtagttcaacatttg 325
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 aattcctcaaaggtatgtctatgctatgatttgttgacctcttcagtagttcaacatttg 906
Query: 326 gggtcttctcacctttggaccactgtgaaatagtattatgaagctggacatatgccttta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 905 gggtcttctcacctttggaccactgtgaaatagtattatgaagctggacatatgcctgta 846
Query: 386 accccaactctggggaggtggagacagaaagatgagaaattggcttcttcactgcgagtt 445
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 845 accccaactctggggaggtggagacggaaagatgagaaattggcttcttcactgcgagtt 786
Query: 446 tgaggccatctcgagttacaacagatctcattgaggtagggacaaaatcggaaaatggga 505
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tgaggccatcccgagttacaacagatctcattgaggtagggacaaaatcggaaaatggga 726
Query: 506 tggaagcaattatgagcatgcatgtataaggatctgtgcttggagtttgttatttaattt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tggaagcaattatgagcatgcatgtataaggatctgtgcttggagtttgttatttaattt 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
