Query= MSMg01no513_m11.b1 MSMg01no513_m11.b1 CHROMAT_FILE:
MSMg01no513_m11.b1 PHD_FILE: MSMg01no513_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:24 2005
(579 letters)
>mm_chr4_56430302_56431280
Length = 979
Score = 1058 bits (547), Expect = 0.0
Identities = 571/579 (98%)
Strand = Plus / Plus
Query: 1 aatgagattttagtgtacagacacatccaccttcagtgttccattttcacatttttttca 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgagattttagtgtacagacgcatccaccttcagtgttccattttcacatttttttca 260
Query: 61 ctttctttgtaaggattttggaggtacagagccataaaaagatgtactagaagccacatg 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 ctttctttgtaaggattttggaggtacagagccataaaaagatgtaccagaagccacatg 320
Query: 121 gtgaagaagacatttctactactgcatcaagtgtcataacagcaactgaacccaactttc 180
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 321 gtgaagaagacatttctactactgcatcaagtgccattacagcaactgaacccaactttc 380
Query: 181 tcagaaggacacaggaaagagaaggggctcaacatggttacaaagaaggaaaacatcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagaaggacacaggaaagagaaggggctcaacatggttacaaagaaggaaaacatcttc 440
Query: 241 atcagaactctagcctttggttgaagagacctcaggcaaggctttggaactgtgatggca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 atcagaactctagcctttggttgaagagacctcaggcaaggctttggaactgtggtggca 500
Query: 301 aaggaattttcgttgtaaaattgtacctttaaacctcattttgaaatgtcatttgggtgc 360
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 aaggaattttcattgtaaaattgtacctttaaacctcattttgaaatgtcatttggatgc 560
Query: 361 acagtatttagcacaaaaacaagtaattgtagtcttaatattagttatatattcaattgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagtatttagcacaaaaacaagtaattgtagtcttaatattagttatatattcaattgt 620
Query: 421 acagttgggaggcactataacttgtcagctctttaaaaactggagtaggagctggaggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagttgggaggcactataacttgtcagctctttaaaaactggagtaggagctggaggaa 680
Query: 481 tggatccacagcctgtcctcggtgggagaggatgcacctaatcctatagagacttgatgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggatccacagcctgtcctcggtgggagaggatgcacctaatcctatagagacttgatgc 740
Query: 541 cccagagaaggggggatgctggcaggaggggtgaggtgt 579
||||||||||||||||||||||| |||||||||||||||
Sbjct: 741 cccagagaaggggggatgctggcgggaggggtgaggtgt 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_m11.g1 MSMg01no513_m11.g1 CHROMAT_FILE:
MSMg01no513_m11.g1 PHD_FILE: MSMg01no513_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:24 2005
(655 letters)
>mm_chr4_56597752_56598806
Length = 1055
Score = 658 bits (340), Expect = 0.0
Identities = 405/432 (93%), Gaps = 11/432 (2%)
Strand = Plus / Minus
Query: 234 aaaaactagaaaatgcttagcgtcagacccctaaccaggctgcctttccctttactcttc 293
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaaaactagaaaatgcttagcctcagacccctaaccaggctgcctttccctttactcttc 681
Query: 294 gctctgttttcatctatccgacccctgaggatttggagacttctcaagctcctctagaaa 353
||||||||||| ||||||| |||||| ||||||||||||||||| |||||||||||| |
Sbjct: 680 gctctgttttcgtctatccaacccctaaggatttggagacttcttaagctcctctaggag 621
Query: 354 ccaaaagctcacc-agtgaagcagaagtagctgaggactgttggctggagatgaaatgag 412
|| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccgaaagctcaccaag-gaagcagaagtagctgaggactgttggctggagatgaaatgag 562
Query: 413 tctgttgtagtcaaaggaagtgaagcaaaggcagatgagggtgcaggacttgtaggatct 472
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 tctgttgtagtcaaaggaagtgaagcaaaggcagatgagggcgcaggacttgtaggatct 502
Query: 473 gccattgctgatgctagtcagagattgcatattggtcaaacagacagcacagtgctctga 532
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 501 gccattgctgatgctagtcagagattgcatattgatcaaatggacagcacagtactctga 442
Query: 533 aggagcca---------tgataggaggatgatgaaaaccctttatcaagtgtggtggtat 583
|||||||| ||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 aggagccacaatggctgtgaaaggaggatgatgaaaaccctttaccaagtgtggtggtat 382
Query: 584 atagtgattatcaacctgacaggacctagaattactttggagacaggtctgagcatgttt 643
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 atagtgattatcaacctgacaggacttagaattactttggagacaggtctgagcatgttt 322
Query: 644 gtgagagatttt 655
||||||||||||
Sbjct: 321 gtgagagatttt 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
