BAC Information

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BAC

Clone NameMSMg01-513P06
Chromosome4 (Build37)
Map Location 147,900,773 - 147,901,388
singlet/doubletsinglet
Overlap geneFrap1
Upstream geneLOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Angptl7
Downstream geneExosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b, LOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513P06.T7 (MSMg01no513_p06.b1)MSMg01-513P06.TJ (MSMg01no513_p06.g1)
ACCAG586552AG586553
length736864
length of high quality
(start - end)
669 (40 - 708)35 (72 - 106)
definitionCHROMAT_FILE: MSMg01no513_p06.b1 PHD_FILE: MSMg01no513_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:39 2005CHROMAT_FILE: MSMg01no513_p06.g1 PHD_FILE: MSMg01no513_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTCTTACACAATTTTCCATCAAAACATTCACTGGGCATTTTATAATTACT
AATAAAACATGTAGAAGAACTGTATGTGCTCACTTCAGAGCCATGGATGA
CTGTGCCCAGTGCTCTTTCCTGTCCAGTGGAATGTGCCCTGAGCTTCCCA
GACAGGAAGGCATCCTGGAGTCAGAGTTTGTCACAGCCTACTAAAAAACT
TGGAGGCATAAACCTTGATTGGTCTGGAGAGAAAGTGGGAATTAGGTGTG
GATGCAGCCAAGAAGAAAGAGTTTAAAACTAAAGGCATTAATTGTAACAA
CAGGAAGACCAGTGGTTTCCAGAGCAGTATATGAACACACATGTGTGGTT
TCCAGAGCACCGTGTGTACTCATGTACTGTCTTTAGAGCAGTGTGTGCTT
GAGCATGTGGTACAGGAGGTGGACCTCAGGGCCCCGGGATGCCAGGCGAG
TGCTGGGTCACTGAGCCACACCCCTAGTGTGCTTCTTCTTTGCTGATGAT
CTTTCCCTCTCATTTTTCAAGGACTGGGAGACAGGCTGCTCTTTCCAGGG
GCACTTGAGACCCTCCCAGGTCTAGAGATAACAGCTCCTCAGGTTGCCAC
GATTAGAATGCCACACTGAAATGCTGGCAGAAGCCTTGGCAAAGTCTCTC
TGAGATCTGACCAGAGGGGCTAGGATGAGACTAACC
ACTGTGCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGCCTCGCGGAGTTCCAGGGAGAAAAGAAACAGAGAGGTGAGAGGG
GGAAGATGTTGGGCCCGAAGGGGAAGATGAGGGGGAAGAAGAGAGGAGAG
GGGGATTTTCCCCTTCCTTCCCCTTTCTTCCTTTTCTTTTTTTCTTCTCT
TCTCGCCTGGCCTCCTCCTTTTTTCCCTTGCCCCCCTTCCCCTCTCGTTT
TTTCCCTCTTTCTTCTTTTCCTCTTCTGTTTTTTTTTTTTTTGTTCTCTA
GGCCCGACCCNGCCTTTTTTTTTTTTTCCCCCCCCCCCCCTCGCGCCCCC
CCCCCCTTTTTTTTTTCTTTCCCCCTCCTTCTGTTTTCCGCTCTTTTTCT
TTCTTTTTTTCCTGTTTTTTTTTTTCCCCCCCCCCACTAGTTACANANAG
GNTNTATGTTTCCTTTTTTTTTCTCCCTCCTTCCTTTCTCTCCTCTCTCT
CTTCTCTCTTTCTCCTTTTTCCCGCTCCTCTCCCCCTCTCTTGTTTCGCC
TCTTTTTTCTCTCTCTCTTTCCTTCCTCTCTTTTTTCCTTTCTTCGTTCT
TTTGTCCCTGTCTTTTTACCTCCTCTCTTTCCCCCCCCCTTGTTTTTCTT
TTCCGTCCTCTCCCTTTGTTTTTCTTTCTTGTCCTCTCCTCTTTTTTTTC
TTTTTATGCTTCCCTTCTTCTCCCCCCCCTTCTTCTTTTTTTTTTTTTTT
GCTTCGCGACCCCCCTTCTTTTCCCTTCCCTTTCCCCCCTCTCTTTTTTT
TTTTTTCCCTCTCTTCTTCTTTGTGTTTCTCTCTCCTTTCCTCTTTCTGC
CTTCTCTCTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_p06.b1 MSMg01no513_p06.b1 CHROMAT_FILE:
MSMg01no513_p06.b1 PHD_FILE: MSMg01no513_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:39 2005
         (669 letters)



>mm_chr4_147900773_147901841
          Length = 1069

 Score = 1160 bits (600), Expect = 0.0
 Identities = 612/616 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttcttacacaattttccatcaaaacattcactgggcattttataattactaa 63
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggaattctttctgagacaattttccatcaaaacattcactgggcattttataattactaa 557

                                                                       
Query: 64  taaaacatgtagaagaactgtatgtgctcacttcagagccatggatgactgtgcccagtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 taaaacatgtagaagaactgtatgtgctcacttcagagccatggatgactgtgcccagtg 497

                                                                       
Query: 124 ctctttcctgtccagtggaatgtgccctgagcttcccagacaggaaggcatcctggagtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ctctttcctgtccagtggaatgtgccctgagcttcccagacaggaaggcatcctggagtc 437

                                                                       
Query: 184 agagtttgtcacagcctactaaaaaacttggaggcataaaccttgattggtctggagaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agagtttgtcacagcctactaaaaaacttggaggcataaaccttgattggtctggagaga 377

                                                                       
Query: 244 aagtgggaattaggtgtggatgcagccaagaagaaagagtttaaaactaaaggcattaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aagtgggaattaggtgtggatgcagccaagaagaaagagtttaaaactaaaggcattaat 317

                                                                       
Query: 304 tgtaacaacaggaagaccagtggtttccagagcagtatatgaacacacatgtgtggtttc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgtaacaacaggaagaccagtggtttccagagcagtatatgaacacacatgtgtggtttc 257

                                                                       
Query: 364 cagagcaccgtgtgtactcatgtactgtctttagagcagtgtgtgcttgagcatgtggta 423
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cagagcagtgtgtgtactcatgtactgtctttagagcagtgtgtgcttgagcatgtggta 197

                                                                       
Query: 424 caggaggtggacctcagggccccgggatgccaggcgagtgctgggtcactgagccacacc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 caggaggtggacctcagggccccgggatgccaggcgagtgctgggtcactgagccacacc 137

                                                                       
Query: 484 cctagtgtgcttcttctttgctgatgatctttccctctcatttttcaaggactgggagac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 cctagtgtgcttcttctttgctgatgatctttccctctcatttttcaaggactgggagac 77

                                                                       
Query: 544 aggctgctctttccaggggcacttgagaccctcccaggtctagagataacagctcctcag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  aggctgctctttccaggggcacttgagaccctcccaggtctagagataacagctcctcag 17

                           
Query: 604 gttgccacgattagaa 619
           ||||||||||||||||
Sbjct: 16  gttgccacgattagaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)